RNA id: TU192606


Basic Information

Item Value
RNA id TU192606
length 2481
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G152943
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4532321 ~ 4534824 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTGGTTTTTCCTGGGAAAGATTATTATCAGAgtccagtatttattttcccgCCCCACCAGTGCGTAGCCGTTTCCTGAGCAATAAGGAGTGCGTACACAGTCTTCAGGTACCTGACTTTATTCAAGGAACATTGTGAGGTAACGCAAACCGACACACTGCCCTTCCCTCGGTACAGAGCGGTCAGCCACCTCTCCACAACACCGCcataaagacagacagacagactcttACAGTAAATGACCTCACCGCGCCTTCAGTAGTACTTCACAGATCAGACACGAGAGAGGTGCTGTTGacctttaattgaattaaattgcaTTAGACACAACCAGGCTCTTCAGCGGGCCTGCGGCCGGTCGGGCCAGACTGACCTCTGCCACTCACCTCTGAAACCAGCGGTTTCTAGGGAAGGGGGATTTGTCCATCTCACGTCTGTCCAGGTTTGGACAGGACATCGGGATAGTGTTAAATACTCTATAGAGAGCTGAGAGCCTTTCCACGGCCCCTCCGTGTTCACCAGCTCAATCGCTCGCTCAGTAGAGACATGTTCAGAGGAGAAGCCCCTTCATTACAcaattcagtcatttaaaacacagcaaacaaGGGGTACCTTCCACAGAGCAGAAACAATTTCAACGCTACAGATTAGGAATTAAAGCACATATCCAATTCTGTTAAGACAGCTTGGTGGATTGTCATCTGTAATTTACGGTTTGGGTTTTAAATTACAGAGGATCGCCTGGGTGTGTATTTTTTGGATTACACCGGCAATAGAGTGTAGGTCAGTTACAACAACGCCTGAATAACGGGGGAAATAGTTTAAAAGGTGGAATACCCTTTCAGCTCAGTTTTACgtgaccaaaataaataatgaaaaatattttggttGTATACGTCAGTGGTTTATAGATCCAAGCTCATTATTCTCTCTGTAAACCtcagaaaagcatttttgtcGGTAAAACATTTCTCCACCTTTGGTACTGTAAACTAAACATCATGAGGAATGCCTTGTTTAATAATACAACGAGATGTGcgtatgaatgtatgtgtataaaactacaaaacattTGAAGCACGTTAATAAAATCgatctttataaaacaaaatgacgcTCGCTCTAGGACTATAATACAGACTGTAGATCTATATAGATAAGGTGTGAAGTGTGTATGAACTGTGCGCTCTCCATGGTGTGTGTTGTGCGTTCGCGGTTCATTGTGTTATCGCGGCGCTGTCCGCCTTTCATGTCAGCGGAGGCCGGCCGCGGCTGACCCGGGGGTCACTATGAAAGCGTCGGCTCTGAATGGGGGCCCTCGAGTGGCGGCGGCCTGCTACCCCCCGGCTTTGATACCCCCCCAACCCAGTGCGGGccgcacacactcgcacacatcCTGTTTACACCTGCTGCTTTTGATCACAAATTAAGTGCTctttttaaaggtgttttaatCTCTCCGTTTATGCACAACAGAATCAATTGGTTGCGGTTATTGATGTTGAAATTGTTATCGCGTgccgggggggtggttttgtttgtttgtttgtttgttggttccTGGGGGAGGATTTAGATTAAGACTGTCCTTAGTTGTATAGTTACTATCATTTTATCCTTTCTGCCTGCTGCAAAcctgttaaaaacacatttatatataaaaaaacacaataataataataataataataataataatagtacatacATATGAGAGGGAAATGTTCTAATGTGATAGTGGAACAGCGTGTGAAAGTCTATCTTAATTATTGTAAGTAGGGCTCTCCCAGGACAGTTAATGTCCCGGTGCTTGGGGACGCCGCTTGGACACACTGCCACTTAGCCTCCCCGTGCTGGCGGCAGTGGGGGGTCCGCTGGCTGAGCTGCTTCGGGGATTTACAGCCGTACTCAGAGAGGAGGGGACGGCCATCCTCCGTGCTCCTCTCAGACGGGCTTTAACCTGAACTGCCACGCGCGGGGTACGAATGTCGGCTCTTATCTGTATGGATGGGAAGATCAATagcaattaaatgcaaatctgTTTTTGCATGATTTCGATGTTTCGAGCCCTATGGATTTCCCTAAATCTGACCCCTTTCTGTTGATAGCAGCagctatgtatgtgtgtgtgtgtatgtatatccaTAGAGAgatatgtaaacaaaatatacatcgGATGCTGAGCAGACTTGACTGTCCCTCTGTTCTCGGGCGTCCCGGTGTGAATAAAACTTCTCCTCCGCCGGCAGCCGAGTGTCATCAACTCCCTCTTGCCACAGGAgccgtgtgcgtgtgcgtgtgtgtgtgcatgtgtgtgttgaggtCCAGCTAAGTGGTGGGGAGAGGGTCTCTAGGAAGAGGCCGGCGCTTCCATGGTGGACAGGATCCGCACCACCTCGGTCCGCTGCGTGGGGGAGATGTGCTGCGTCATGTGCACGATGGAGTCCATGGCCACCTCGGGGTTGGCCTGGACCAGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192568 lncRNA upstream 239439 4292030 ~ 4292882 (+) True G152906
TU192522 lncRNA upstream 271686 4258866 ~ 4260635 (+) True G152866
TU192366 lncRNA upstream 770494 3723913 ~ 3761827 (+) True G152764
TU192236 lncRNA upstream 1271892 3260210 ~ 3260429 (+) True G152657
TU192235 lncRNA upstream 1332134 3199332 ~ 3200187 (+) True G152656
TU192772 lncRNA downstream 655703 5190527 ~ 5190796 (+) True G153080
TU192775 lncRNA downstream 660964 5195788 ~ 5201535 (+) True G153082
TU192811 lncRNA downstream 773121 5307945 ~ 5309091 (+) True G153113
TU192816 lncRNA downstream 786236 5321060 ~ 5323923 (+) True G153118
TU192858 lncRNA downstream 909555 5444379 ~ 5445257 (+) True G153154
AMCG00005545 mRNA upstream 12216 4495608 ~ 4520105 (+) True AMCG00005545
AMCG00005544 mRNA upstream 41502 4479446 ~ 4490819 (+) True AMCG00005544
AMCG00005537 mRNA upstream 222173 4305625 ~ 4310148 (+) True AMCG00005537
AMCG00005538 mRNA upstream 227165 4282517 ~ 4305156 (+) True AMCG00005538
AMCG00005534 mRNA upstream 251876 4264415 ~ 4280445 (+) True AMCG00005534
AMCG00005546 mRNA downstream 25397 4560221 ~ 4563020 (+) True AMCG00005546
AMCG00005553 mRNA downstream 70052 4604876 ~ 4615951 (+) True AMCG00005553
AMCG00005554 mRNA downstream 91289 4626113 ~ 4635255 (+) True AMCG00005554
AMCG00005577 mRNA downstream 449406 4984230 ~ 5000598 (+) True AMCG00005577
AMCG00005580 mRNA downstream 487447 5022271 ~ 5067746 (+) True AMCG00005580
TU192563 other upstream 247358 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 1261482 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other upstream 1261482 3266742 ~ 3270839 (+) False AMCG00005498
TU192155 other upstream 1682713 2845217 ~ 2849608 (+) True G152588
TU192048 other upstream 2021645 2503993 ~ 2510676 (+) False AMCG00005481
TU192612 other downstream 25389 4560213 ~ 4561484 (+) False AMCG00005546
TU192781 other downstream 679999 5214823 ~ 5221915 (+) False AMCG00005583
TU193227 other downstream 1952894 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 2725853 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 3681066 8215890 ~ 8230590 (+) False G153815

Expression Profile