RNA id: AMCG00008835


Basic Information

Item Value
RNA id AMCG00008835
length 1308
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00008835
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13063495 ~ 13065081 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAACATGTAACTTTCAGCGTGTGTGCTGCACGACGTGGCGTTGCGGGCTGCGCTGCAATATGAGCCAGAATATGCTTGAACGCGAGTTTTGAAatcatatttgatttaatttgttttattgttattatatattttcataattatgttttaattgtgcaaCCTACAAGCTCAGTGCAGTAGCGATCGGGTCGGAATGCATTTATGATCTGTAACTTTGGAAACAGCGTGTTTTCAGCACTGTATACAAGAAACTAAAATTGatgcttttataatttttattggtattataaatactactactattagtGTTTGCGGCTTAGTATGAGTTTCGATGCGAAGGCAGAGCGGGAGCAGGAGGGGGAAGAAGAGAGCGTGTTCCCAGTAGATGACGGCCTGTTTGCGGACACTTTCTCCGAGGAGCGTCGCTTCTGCTTCGGCGGAGAGGAGTTGCGGATCACCCAGCTGTTCAGCGCGGACCTGGGCGTCGCGGCGCAGGTCTGGGACTCGGCTCTGTGTCTATGTAGGTATctggaacagcagcagtgtgtgttcTCAGGGCAGCGTGTAATTGAGCTGGGCTCTGGAACTGGCATCTTGGGCATCCTGGCAGCACGACTGGGAGCGCAGGTGACGCTAACCGACCTGCCCCACACCCTCCCCCAGCTGCGGCACAACGTCTCTGCCAACCGCCCCCCCCAGGGCTGGCCGGGGCCACCCCCCGAAGTGCGGGCGCTGTGCTGGGGTAAAGACCAGGGGCAGTTCGGGCAGGACTGGGACGTGGTGCTGGGGGCGGACATCGTGTACTTGCAGGACAGCTTCCCGCAGCTGCTGGCCACGCTGGCGCATCTGTGCGGGGGCGGGGCCACAGCGTACCTGGCTGCACGGATGAGGGCGGAGCACGGGGCGGGGCAGTTCTTTGGGGAGCTGCTGCCCCGCATCTTCCaggtggagctgctgcagagccaCCCAGAGAGCAACATCAACATGTACAGAGCCAGGCTGGGGAGAGCGTCATGACACGGACtgggggagggatggagagagggaggaagactGGGATAAGGATACACTGACAGAaacatgtacagtgaaacatggacaCGGACAAAGCTGTAATGAGACAGGGATGCTAAGAGGCTCACAGACAGGATTAGACACCcataaacacagagagagggacagtgcCATGACTGAGCTGTATCCTCTGTAATTATCCagatttttatataaacaagCATCTGCTGTGGTGTGCAACTCCTTTAAGTacgtatttttaataaaaataaatgttttttaaaaggaaaaca

Function

GO: NA

KEGG:

id description
K21803 METTL21B, EEF1AKMT3; EEF1A lysine methyltransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64844 lncRNA upstream 82720 12978864 ~ 12980775 (+) True G51828
TU64828 lncRNA upstream 135650 12927618 ~ 12927845 (+) True G51814
TU64810 lncRNA upstream 166388 12896349 ~ 12897107 (+) True G51796
TU64732 lncRNA upstream 317729 12739197 ~ 12745766 (+) True G51736
TU64731 lncRNA upstream 340515 12721082 ~ 12722980 (+) True G51735
TU64940 lncRNA downstream 75482 13140563 ~ 13187139 (+) True G51904
TU64982 lncRNA downstream 188733 13253814 ~ 13257640 (+) True G51939
TU65028 lncRNA downstream 244535 13309616 ~ 13310773 (+) True G51968
TU65029 lncRNA downstream 246248 13311329 ~ 13312458 (+) True G51969
TU65030 lncRNA downstream 248509 13313590 ~ 13315052 (+) True G51970
AMCG00008838 mRNA upstream 49362 13005602 ~ 13014133 (+) True AMCG00008838
AMCG00008836 mRNA upstream 61411 12997098 ~ 13002084 (+) True AMCG00008836
AMCG00008837 mRNA upstream 70770 12980944 ~ 12992725 (+) False AMCG00008837
AMCG00008831 mRNA upstream 100512 12958757 ~ 12962983 (+) True AMCG00008831
AMCG00008829 mRNA upstream 150759 12909685 ~ 12912736 (+) True AMCG00008829
AMCG00008840 mRNA downstream 8999 13074080 ~ 13097915 (+) True AMCG00008840
AMCG00008841 mRNA downstream 40445 13105526 ~ 13117044 (+) True AMCG00008841
AMCG00008842 mRNA downstream 58150 13123231 ~ 13132675 (+) True AMCG00008842
AMCG00008847 mRNA downstream 216193 13281274 ~ 13288925 (+) True AMCG00008847
AMCG00008858 mRNA downstream 234225 13299306 ~ 13302628 (+) True AMCG00008858
TU64845 other upstream 71003 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 136701 12925238 ~ 12926794 (+) True G51812
TU64761 other upstream 217262 12842715 ~ 12846233 (+) True G51756
TU64730 other upstream 346709 12715494 ~ 12716786 (+) True G51734
TU64384 other upstream 1598007 11460363 ~ 11465488 (+) True G51445
TU64968 other downstream 157239 13222320 ~ 13224946 (+) True G51928
TU64983 other downstream 189097 13254178 ~ 13257640 (+) False G51939
TU65027 other downstream 241651 13306732 ~ 13309430 (+) False AMCG00008856
TU65505 other downstream 1416840 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 1462737 14527818 ~ 14540958 (+) False AMCG00008910

Expression Profile