RNA id: TU71004


Basic Information

Item Value
RNA id TU71004
length 349
lncRNA type sense_over
GC content 0.48
exon number 1
gene id AMCG00009409
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37280548 ~ 37285365 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCTAACCCCGATCCCTCTCTGCTGGGTTTTATTCCAGCTCAGTTGGTGGCACTTACTGACCTGAATGTTCTCCACCCGTTTTAAGAGCTGGAAAACACTCCCGAGGTTGGAATAATTGGTGGACCATCATTAGTTTTAAGAGtgcagttggaacaaaaaaaaaaaaacagccgtCACGAGTCCTGCGGGCCCAGGGATGTGAAGCGCTGCTTTAAGGGAATGCTTTTGGCAGACCTCCTTTCTCATCCTCCACATTGGTGCTGTGCAGAAGCCTACGTTGAGAAACAGTGTGAGGAAATTAAATGTCTGCTTCAGGAAGCAAGCAGAGAGGCACAGATGAATAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70983 lncRNA downstream 12912 37201032 ~ 37267831 (-) False G56795
TU70984 lncRNA downstream 54741 37201032 ~ 37226002 (-) True G56795
TU70924 lncRNA downstream 112499 37167994 ~ 37168244 (-) True G56742
TU70874 lncRNA downstream 408920 36869548 ~ 36871823 (-) True G56710
TU70758 lncRNA downstream 887225 36096808 ~ 36393518 (-) True G56612
TU71005 lncRNA upstream 127 37281218 ~ 37285365 (-) False AMCG00009409
TU71007 lncRNA upstream 12801 37293892 ~ 37297002 (-) False AMCG00009408
TU71009 lncRNA upstream 12801 37293892 ~ 37394988 (-) False AMCG00009408
TU71014 lncRNA upstream 19453 37300544 ~ 37367669 (-) False G56818
TU71015 lncRNA upstream 19453 37300544 ~ 37305990 (-) True G56818
AMCG00009411 mRNA downstream 991 37278886 ~ 37279752 (-) True AMCG00009411
AMCG00009407 mRNA downstream 3194 37275462 ~ 37277549 (-) True AMCG00009407
AMCG00009394 mRNA downstream 183416 37088783 ~ 37097327 (-) True AMCG00009394
AMCG00009390 mRNA downstream 359604 36900293 ~ 36921139 (-) True AMCG00009390
AMCG00009391 mRNA downstream 406014 36873672 ~ 36874729 (-) True AMCG00009391
AMCG00009408 mRNA upstream 4485 37285576 ~ 37297182 (-) True AMCG00009408
AMCG00009406 mRNA upstream 19437 37300528 ~ 37305420 (-) True AMCG00009406
AMCG00009412 mRNA upstream 45664 37326755 ~ 37332027 (-) True AMCG00009412
AMCG00009416 mRNA upstream 78994 37360085 ~ 37402881 (-) True AMCG00009416
AMCG00009417 mRNA upstream 186163 37467254 ~ 37476035 (-) True AMCG00009417
TU70990 other downstream 60667 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 1408146 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 1740933 35538887 ~ 35539810 (-) False G56546
TU70686 other downstream 1740933 35538887 ~ 35539810 (-) True G56546
TU70688 other downstream 1740933 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 1299194 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 1554225 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 2867634 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 5388036 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 6201330 43482421 ~ 43945297 (-) True G58333