RNA id: TU129987


Basic Information

Item Value
RNA id TU129987
length 1493
lncRNA type sense_over
GC content 0.38
exon number 4
gene id AMCG00011051
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8819551 ~ 8864051 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCGCCTTAATAAGCCGCACAACATCTGGGACCCCCCTACTTCCATCCAGGGtgcccttcaccatctgcactcgtttcattaacatgcaaatcaatttataacttttttgaaattcgtttttctggattttgttgttgttattctgtctctcactgttaaaatacacctaccattacaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatacttttttccctcactgtatgtattttaccTTTGCtttacagtaaagtacagtatttttgCAGTCAGAGTAAAGGTTTTAAAGGTTTCACATTCAATTCAAGGAGAATGGCAGTGTTCTGCAAAATGGTTCAgtacattaaacacaattatgTATAATATCCGtaaaattacatacatttagtttagtttttttttttatatagtaaaTGTCCAGGttattcaatgtgttttaaccatatattaaaatacgGTATTTAACGTTGAAAAAATACGTTTAATTACACAGAAttgttttacagtgtatttatttattcggtaacactttacaataaggtactgtAATTCCTCAtgcattaatatatgaataccataggatttaaacatcaatatatCATAaccatcatctgagttctgatgttgattaaccctaaccctgttatacatgtgattaacataagatcTCAAATTAAGTGCATGGCATGCTCGTGTGTTTATCCTGCGGTactcatatattaattcatgaggaattacaCCGCCTTATTATTGCAaagtgtcacttttttttttctatttaagttttcacttttttgcaCTTTTGATCTGAATGTCTGTCTAAAGATCAATTATAAAGATCATTCATCTTGTAATctgcattttggaaaatgtgtttcctgTTGTTTGTATACATAGTGTGACTAATTTTTCTCTTTAACTATTCATTTCAGCATACAAAAATGGTTTTCAAAATAATAGCCCTCTCAGTGGTCGGGGCAGGGGCCTCTGTGGTCGGCTTACCATTGATTCTTGGTGGAATCGGCTTCACTGCCGGGGGGATAGCGGTTGGATCTTATGCGGCTGGCATGATGTCGTCCGCTGCAGTTGCCAACGGCGGGGCAGTTGCAGCGGGCAGTACAGTGGCAGTGCTCCAGTCAATCGGAGCAGCTGGACTTTCCACAGCAGCCACTGGTGCTGTAGCAAGTGTTGGTGGAGCTGTAGGTGCAGTCTTGGCACTACTGTGAAGACAAAAAACGATGTAACCAGTGCTTAATATGTGCCTGATCCTGCTCTCATATTCTGCACTGTTCTGTTCCAGGACATGCGCCTGCCTCGTCACCCCTCCGCTCTCATATATGCTTTGCGTTCCAGCACcttctgatttacaaattaagcactgaaTGTAACCATATTTTAACCTTTCTGGTGAAATTATTGCATGTCTCCAATAAAAGCTGATTTAATTGTTCTGCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129971 lncRNA downstream 34942 8806470 ~ 8811022 (-) True G103999
TU129887 lncRNA downstream 383302 8460930 ~ 8462662 (-) True G103929
TU129849 lncRNA downstream 503146 8342584 ~ 8342818 (-) True G103903
TU129846 lncRNA downstream 504376 8341363 ~ 8341588 (-) True G103900
TU129839 lncRNA downstream 678040 8167695 ~ 8167924 (-) True G103893
TU130051 lncRNA upstream 114756 8964717 ~ 8965281 (-) True G104054
TU130052 lncRNA upstream 115411 8965372 ~ 8965579 (-) True G104055
TU130116 lncRNA upstream 387830 9237791 ~ 9265487 (-) True G104098
TU130156 lncRNA upstream 560628 9410589 ~ 9412922 (-) True G104126
TU130348 lncRNA upstream 1873629 10723590 ~ 10723956 (-) True G104272
AMCG00011046 mRNA downstream 110381 8721384 ~ 8735583 (-) True AMCG00011046
AMCG00011042 mRNA downstream 235712 8587593 ~ 8610252 (-) True AMCG00011042
AMCG00011040 mRNA downstream 263250 8578631 ~ 8582714 (-) True AMCG00011040
AMCG00011041 mRNA downstream 290433 8548833 ~ 8555531 (-) True AMCG00011041
AMCG00011034 mRNA downstream 381466 8463214 ~ 8464498 (-) True AMCG00011034
AMCG00011049 mRNA upstream 16380 8866341 ~ 8886705 (-) True AMCG00011049
AMCG00011050 mRNA upstream 63480 8913441 ~ 8930598 (-) True AMCG00011050
AMCG00011052 mRNA upstream 91155 8941116 ~ 8952749 (-) True AMCG00011052
AMCG00011054 mRNA upstream 115856 8965817 ~ 8970772 (-) True AMCG00011054
AMCG00011057 mRNA upstream 337749 9187710 ~ 9200667 (-) True AMCG00011057
TU129762 other downstream 826442 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 3097400 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 3705508 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 4195858 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 4659990 4169793 ~ 4185974 (-) True G103112
TU129988 other upstream 4944 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 384450 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 751923 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 891172 9741133 ~ 9743785 (-) True AMCG00011086
TU130712 other upstream 3145452 11995413 ~ 11997786 (-) False AMCG00011140

Expression Profile