RNA id: TU129989


Basic Information

Item Value
RNA id TU129989
length 567
RNA type TUCP
GC content 0.45
exon number 5
gene id AMCG00011051
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8819551 ~ 8864051 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAGTGGCCGTGCATATAGTCCGTCATATACGAAACTACTGTAGCACTCAGATACGCTGGGAAGATTGTTTAcctttttacattaattaaactacatccatctatataaatataatactttAGTCGCCTATTGtccttatatttatttattttccttttcagcgTACACAAATGAACTTAAaaaCTATAGCAGTGATCGCGGTTGGGGCAGGTGCCTCGGTGGCCGCTGTACCATTGATTCTTGGTGGAATCGGCTTCACTGCCGGGGGGATAGCGGCCGGATCTTATGCGGCTGGCATGATGTCGTCCGCTGCAGTTGCCAACGGCGGGGCAGTTGCAGCGGGCAGTACAGTGGCAGTGCTCCAGTCAATCGGAGCAGCTGGACTTTCCACAGCAGCCACTGGTGCTGTAGCAAGTGTTGGTGGAGCTGTAGGTGCAGTCTTGGCACGGCTCCGAGGATAAAACAATGTGACCGTATTGTAACCTTTGTGGCGAAATGATTGCATgtcttaattaattgaattaattaaaagttgATTTTAAATACTCTAaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129971 lncRNA downstream 8529 8806470 ~ 8811022 (-) True G103999
TU129887 lncRNA downstream 356889 8460930 ~ 8462662 (-) True G103929
TU129849 lncRNA downstream 476733 8342584 ~ 8342818 (-) True G103903
TU129846 lncRNA downstream 477963 8341363 ~ 8341588 (-) True G103900
TU129839 lncRNA downstream 651627 8167695 ~ 8167924 (-) True G103893
TU130051 lncRNA upstream 101051 8964717 ~ 8965281 (-) True G104054
TU130052 lncRNA upstream 101706 8965372 ~ 8965579 (-) True G104055
TU130116 lncRNA upstream 374125 9237791 ~ 9265487 (-) True G104098
TU130156 lncRNA upstream 546923 9410589 ~ 9412922 (-) True G104126
TU130348 lncRNA upstream 1859924 10723590 ~ 10723956 (-) True G104272
AMCG00011046 mRNA downstream 83968 8721384 ~ 8735583 (-) True AMCG00011046
AMCG00011042 mRNA downstream 209299 8587593 ~ 8610252 (-) True AMCG00011042
AMCG00011040 mRNA downstream 236837 8578631 ~ 8582714 (-) True AMCG00011040
AMCG00011041 mRNA downstream 264020 8548833 ~ 8555531 (-) True AMCG00011041
AMCG00011034 mRNA downstream 355053 8463214 ~ 8464498 (-) True AMCG00011034
AMCG00011049 mRNA upstream 2675 8866341 ~ 8886705 (-) True AMCG00011049
AMCG00011050 mRNA upstream 49775 8913441 ~ 8930598 (-) True AMCG00011050
AMCG00011052 mRNA upstream 77450 8941116 ~ 8952749 (-) True AMCG00011052
AMCG00011054 mRNA upstream 102151 8965817 ~ 8970772 (-) True AMCG00011054
AMCG00011057 mRNA upstream 324044 9187710 ~ 9200667 (-) True AMCG00011057
TU129762 other downstream 800029 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 3070987 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 3679095 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 4169445 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 4633577 4169793 ~ 4185974 (-) True G103112
TU130111 other upstream 370745 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 738218 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 877467 9741133 ~ 9743785 (-) True AMCG00011086
TU130712 other upstream 3131747 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 3203799 12067465 ~ 12069079 (-) False AMCG00011135

Expression Profile