RNA id: AMCG00012411


Basic Information

Item Value
RNA id AMCG00012411
length 2891
RNA type mRNA
GC content 0.58
exon number 17
gene id AMCG00012411
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17730997 ~ 17751455 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTCTCATGCGAGCGCAGCGGTGAGAGTTTCCTGTTTGAGAAAAGTCTCTCTGTCGGAGGAATGAGAGCCAGCGGCGGATgtgtacattatatacatatacatttataatcatATACTGCGGCAACAAGCAGAGAAGTGTGCGAGAACCCGAGTAGTGGGAAAAACTGGATTTTTTAACGAGGGAGAAGACTGAAAAGAGGGCTTTAAAAGAAATCGCCccctatatatacatttactttatatataaatactatatgtatatttctataCATCGCTGAAGCCTGCCATGTCTCGCCTAGCGGAGCCCAAGAGTCGCCAGGACAGGGTGAAGGAGATCGCGCTACGGAACGTGGCTCTCAGGAACAAGAgcccgATGATCCGGGAGCGGCCCAATTCAGCCATCTACCCCTCAGAAAGCCTCCGCCAATCACTGCTGGGGGCCCGCAGAGTTCGCTCCggcctctccctctccaaaaGCGTCTCTACCAATAACATTGCGGGGAACCTGAACGAGGACTCCCCCCTGGGGCTGCGCAGGATCCTGTCCCAGTCCACCGACTCGCTGAACTTCAGGAACCGGGCGCTGTCCATGGAGTCCCTGAACGATGAGGGCGAGCTGCACTACCTGCAGACGGTGGAGGAGTTGTGTCAGGAGGGTCGGGACTTCGAGGCTGACTCCTGGAGCCTCGCTGTCGACTCCAACTTCCTGAAGCATCAGCGCAAAGAGGAGATGAAGAGACAGGACGTCATCTACGAGCTGATCCAGACAGAGCTGCACCACGTGCGGACCCTGCGCATCATGGAGGGCGTGTTCCGCCGAGGAATGCTGGAGGAGGTGGGTCTGGAGCCGGGCGTGtTCTCCGGCTCGGTGGCTGATGAGATGAGGAAGGCCTACTCCGAGTTCTGCTCCCGACACCTGAAGGCGGTGAAACTGTACAAAGAGCTGCTGTCGCGCGACAAGAGGTTCCAGATCTTCATCAGGagggTGAGCCGAGGCAGTTTGCTCCGCCGCCACGGTATCCAGGAGTGCATCCTGTTGGTCACGCAGCGCATCACCAAGTACCCCGTCCTCATTGACCGCATCCTGCACAACTCCACCGGCAACGAGACGGATGCGGTGCTGCTGTCCCAGTCGCTTGTTCAGATCCGGTCCCTGCTGAGCCAGGTGGATCAGGaggtgctggagctggagcggCGGCAGCGGTTGCAGGAGGTCCAGACCCGGCTGGGCCCACGGGCCGAGGCCACGGTGCGGGGCGGCCAGGTGTTCCGGGGTGGGGAGTTGCTGCGGAGGAGGCTGCTGCACGAGGGGCCCCTGCTCTGGAAGACGGGGTCGAGGTTCAAAGATGTTCAGGACAAGCCGCCCGTGCTGCCGCTACAGAACCTGATCGTGAGAGACATCGCCAACCAGGAGCGCGGCCTGTTCCTCATCAGCGACTCCACCCCCCCGGAGATGTACGAGATCCACACCGCCTCCCGCGACGACCGGCACACCTGGATGAGGCTGATCCAGCAGGCGGTCAGCAGTTGTCCCTCCAGGGAGGATTTTCCCTTGATAGAGACTGAAGACAAGGCTCTCCTGCGCAGGCTGAGAGaTGGGGACGAAGACTGTCCGTCACTCAATGGGACCTACGACGATGGCAGCAGTGACCCCAACCAGAGGGACCGCAATGGCAATCAGCTGGAGGAGAGGCCGGTGAGTGAGGCGGCAGTGATCCAGCAGGACTCTGTTCTGGAGCTGTGCGTCAGACAGGAACCCGGCGGTGTCCCCACGCCCACCACCGCCCCCACCATGCCAACCCTCACCACCACGACCACAGCGGCGGCACCATCGATCCCGGAGAGGGGCCAGAAGCTGAGCCGTTCCCTGTCACGTGACACGGGCCTGGATGCCAGCGTGGGGGCGGCCGTGGCGGGGAGCAACGACCTGGCGCTGCTGCAGAGACAGCACACCCTGCTGCAGGAGGAGCTGGGCCGGCTCCGCGGGGCCGAGGCCAGGCTGCGGGACAGCGAGAGGGCCAGGGCCGAGCTGGAGAGGCAGCTGAGGGAGCTGAGGCACAGTGTCACCCTGCAGGAGCAGCGGGAGGGCAGCGGCCCGCAACCCCCGGCTGGAGCCCCGCCCACAGTGCAGGCTCCTCCCAGCTCAGAGGCTACGCTGCGTTTGGCTGAGGGCACTGACCAGACCGACCAATCGGAGTGTCCGCAGGAGGGCAGCGAATCGGAAGTGAACTCCAACGacgaggatgaggatgaggatgaggatgaggaagacCTGTCCCCCCGGTCGGAGAGCCCCAGAGACTTGCAAGATATCCCAGAGGAGAGCGAGTGTGGCGGGGAACCCAGAGACACCGGGCCGGACGGAGAGTCGCCCCCCAGCTAACGGGCTCCCCGTGCCAGAACCCACCCACACTGGACagagcaggacaggacagggcAGGACTCGCCTGGGACACAACCAGAACTCAACCGGACTGGACAGAACTGCAGTAGACTGGACAGGACCACAGTGGACTTCCCTCCTTGAAGCAGTTCCTCCCTGGAGACTTAATTAGACACCCTCAATTAAACTTAATTGGAaccatgttttttaaattccattcaGCAATTAAACGGTCTATTTCCATACAACTCTATCgacagactggagccagcgcggtgtggactatagtatagagGTCCAGTCTGGAGCCAGATTAATGGATTATTTAATGGGATTTTTAAAcctattttttaaactgtaaatacaagaaaaaaagaaaactaaattcaaaTCAGTTACTGTTTTCAGCATCAGAATCTATTTTTAAGAAGGTTCAATTAAGGGATCAATTAACTGAGGGAGCCGAGCGTGCTGGAGATAGGACTGGGGGAGCTAGTGGAAAAAtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171670 lncRNA upstream 66827 17663433 ~ 17664170 (+) True G136571
TU171665 lncRNA upstream 77535 17649265 ~ 17653462 (+) False G136569
TU171663 lncRNA upstream 81890 17648628 ~ 17649107 (+) True G136568
TU171659 lncRNA upstream 95036 17623113 ~ 17635961 (+) True G136564
TU171618 lncRNA upstream 241453 17489319 ~ 17489544 (+) True G136539
TU171869 lncRNA downstream 149453 17900908 ~ 17901656 (+) True G136718
TU172036 lncRNA downstream 510442 18261897 ~ 18269507 (+) True G136842
TU172043 lncRNA downstream 543760 18295215 ~ 18317076 (+) True G136848
TU172070 lncRNA downstream 682115 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA downstream 716351 18467806 ~ 18470784 (+) True G136866
AMCG00012412 mRNA upstream 17687 17700146 ~ 17713310 (+) True AMCG00012412
AMCG00012413 mRNA upstream 39714 17689118 ~ 17691283 (+) True AMCG00012413
AMCG00012410 mRNA upstream 42526 17683394 ~ 17688471 (+) True AMCG00012410
AMCG00012402 mRNA upstream 51032 17676665 ~ 17679965 (+) True AMCG00012402
AMCG00012403 mRNA upstream 54641 17667343 ~ 17676356 (+) True AMCG00012403
AMCG00012417 mRNA downstream 4251 17755706 ~ 17760282 (+) True AMCG00012417
AMCG00012423 mRNA downstream 41071 17792526 ~ 17795244 (+) True AMCG00012423
AMCG00012418 mRNA downstream 55104 17806559 ~ 17814564 (+) True AMCG00012418
AMCG00012428 mRNA downstream 186482 17937937 ~ 17941562 (+) True AMCG00012428
AMCG00012429 mRNA downstream 251184 18002639 ~ 18006774 (+) True AMCG00012429
TU171664 other upstream 77535 17650767 ~ 17653462 (+) True G136569
TU171661 other upstream 84092 17645641 ~ 17646905 (+) True G136566
TU171641 other upstream 183029 17547368 ~ 17547968 (+) True G136558
TU171630 other upstream 212599 17517450 ~ 17518398 (+) False AMCG00012401
TU171527 other upstream 254900 17474648 ~ 17476097 (+) False G136489
TU171766 other downstream 3965 17755420 ~ 17757687 (+) False AMCG00012417
TU171770 other downstream 12690 17764145 ~ 17767531 (+) True G136641
TU171771 other downstream 12690 17764145 ~ 17766491 (+) False G136641
TU171753 other downstream 40796 17792251 ~ 17795217 (+) False AMCG00012423
TU171793 other downstream 89478 17840933 ~ 17843921 (+) True G136658

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028881 True 4238 mRNA 0.47 22 NC_007130.7 11039517 ~ 11106315 (-)