RNA id: AMCG00012423


Basic Information

Item Value
RNA id AMCG00012423
length 456
RNA type mRNA
GC content 0.64
exon number 4
gene id AMCG00012423
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17792251 ~ 17795244 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGGGAAGGGGGGGATGGGCGCCGTATTTTCCTGAGTCATTGACTGACAGGGCGCCGTTTCTCCCCGCGGGCCGGCCGCTGTGGCCCCGCTGTCACAGGGAGAACCTGACCCTTCGACCCCCGGCGAGCTGCGGCACCGACACCAGCACCGGCGGCGGTCGGGTGCGGGACGGTGTGGACAACAGTGAGTACATGCGCAATGGGGACTTCCTGCCCACCCGGCTGCAGGCCCAGCAGGATGCAGTCAACATTGTGTGCCACTCCAAGACCCGCAGCAACCCGGAGAACAACGTGGGCCTCATCACGCTGGCCAATAACTGCGAGAAGCTGATCTTGCCCCGCGGCTGGACGGCGTGCAGCTTGGATAGGATGCGCCCCGTGTCGGGGGTCAGCGTGGTCAGCACCTCGCAGTTACTGGACAGGGACCAGAAGAGAGACAAGACCAACAATTAG

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171670 lncRNA upstream 128356 17663433 ~ 17664170 (+) True G136571
TU171665 lncRNA upstream 139064 17649265 ~ 17653462 (+) False G136569
TU171663 lncRNA upstream 143419 17648628 ~ 17649107 (+) True G136568
TU171659 lncRNA upstream 156565 17623113 ~ 17635961 (+) True G136564
TU171618 lncRNA upstream 302982 17489319 ~ 17489544 (+) True G136539
TU171869 lncRNA downstream 105664 17900908 ~ 17901656 (+) True G136718
TU172036 lncRNA downstream 466653 18261897 ~ 18269507 (+) True G136842
TU172043 lncRNA downstream 499971 18295215 ~ 18317076 (+) True G136848
TU172070 lncRNA downstream 638326 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA downstream 672562 18467806 ~ 18470784 (+) True G136866
AMCG00012417 mRNA upstream 32244 17755706 ~ 17760282 (+) True AMCG00012417
AMCG00012411 mRNA upstream 41071 17730997 ~ 17751455 (+) True AMCG00012411
AMCG00012412 mRNA upstream 79216 17700146 ~ 17713310 (+) True AMCG00012412
AMCG00012413 mRNA upstream 101243 17689118 ~ 17691283 (+) True AMCG00012413
AMCG00012410 mRNA upstream 104055 17683394 ~ 17688471 (+) True AMCG00012410
AMCG00012418 mRNA downstream 11315 17806559 ~ 17814564 (+) True AMCG00012418
AMCG00012428 mRNA downstream 142693 17937937 ~ 17941562 (+) True AMCG00012428
AMCG00012429 mRNA downstream 207395 18002639 ~ 18006774 (+) True AMCG00012429
AMCG00012439 mRNA downstream 335040 18130284 ~ 18134221 (+) False AMCG00012439
AMCG00012432 mRNA downstream 367332 18162576 ~ 18169744 (+) True AMCG00012432
TU171770 other upstream 24995 17764145 ~ 17767531 (+) True G136641
TU171771 other upstream 26035 17764145 ~ 17766491 (+) False G136641
TU171766 other upstream 34839 17755420 ~ 17757687 (+) False AMCG00012417
TU171664 other upstream 139064 17650767 ~ 17653462 (+) True G136569
TU171661 other upstream 145621 17645641 ~ 17646905 (+) True G136566
TU171793 other downstream 45689 17840933 ~ 17843921 (+) True G136658
TU171871 other downstream 107588 17902832 ~ 17903810 (+) True G136720
TU171980 other downstream 337163 18132407 ~ 18134381 (+) True AMCG00012439
TU172065 other downstream 590045 18385289 ~ 18388306 (+) True G136864
TU172158 other downstream 744301 18539545 ~ 18544490 (+) True AMCG00012460

Expression Profile