RNA id: TU173076


Basic Information

Item Value
RNA id TU173076
length 2640
RNA type TUCP
GC content 0.48
exon number 11
gene id G137629
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21270360 ~ 21332070 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tCTGAGCATaggctaatttattttatttcttaatgaaggtttaaaagaaaagcattttttaaataaacgatatatattgtgatatatttgcAACATTGATGGAGCTGTCTGTCTTATCTCACTGAAGCGGAGAGGAAGCAGCAGGACTCTGACAGCATCGAGGGTGAGTTGTAAACAGCCGTGTGTGAAAGGCAGCTCTGAAGATGGCAGAAGAGCTCCTGcagacattcacacacagactcCAAGGCTCTTCCTCTAGAAACCCTCACTCCCCCTGCAGTGGCTGTGCAGGTGACTCGgtgttcccctctctccccctgtgcAGGTCCAGCCggctctctctgtcactctgtaTACTGCGGAGGGGGGGTCTTGGGAAAAGCGTCCTGCTCTGTGTCCGGTGCCAGCTGGTAGCCCGGGGGATTGCTGGGCTGTGTTGCTGGCTGAGAGTTAGCCCCATACTGTATGACAATCACAGGCTGAGGAatgGGCTGCCATTGCACACAGCTTTGCACCCAAAGGCCGACACGGAGATGGCCACGCAGAACTCCAGGATCGAGGAAAACAGCATTACCCATGCCAAACTGCGTAAAATGTCCTGGAGAATGAAAATTACATAAGGGGTTACCACTCCTAAACCGATAGAGAAAAGGCCGATCATGATCTGGACCACCTGCTAgtgcagagagaggggaagagggcAGAGAGGAAGTGCTCAGAGCTACAACATGAGACAAATACGTGCACTTTCAATGGTAAGTATAGGTAAATATGGCTGGCGTGGTTTGTGactacacagacacagtgagCTCTCACCCCCAGGGCTGTGGGCTCTCCTTTCACAAAGCGCTTCAGAGCTGCATCCCTTGGGGAGGTGAAGCCCTGTGGCAGCCCTGACTGTTGAGCACCAATGGGCACAGCGCCCGGACCCTGTGGGCACATCTGTGTGACGATCACCACGCCCCCGTTAGTGGGAACAGAGGTTAACATCTTCAACAGCTGGTCAGGGCTTCctggtaTGTAGCAAAACTGCCACAACAACATTTTTCAATACTCAACAATTCCTTGAGATGGCATAAGAAAGAATGGAGGAGAGATTCCTTACCTCTGTCTGAAAAGGCATTAAGACTAAAGCAGGCATTTTGCATGCCACTGAAGACAGGTTCATAGACCATAATTTGAAATCACTTCAAGGGAATGGATATGGATCATTTACCCATTTCAAACATGATGGACAATACAAACAGTATTTGAGTGAACGTAGTGGAATGCCCAAAGGGATGTCAAATGGTGACCCCATTGAAACGCGAGCTAATGGGTGCACAGCTTACGTTTCATTTAGCTGTGTTAACGCTGCTGTCAGTGCAACGAAAGCTGTAATTATcagaagaaaatgcaaacataCTGGACATGACAAAGACTATTGACTGTTCAGTGCTATCTTTTATTCAGATGCTCATTGCTCttggcaaaaaacaacaacaaatgaaatcCTGGTGGAAGTGGGCTGTTGATCAACAGAGCATTTTATTCTTCTCTGACCGATATTAAATATCTATCCTCCAAATATAAGGCTGAAGGAAGATTTGACAGGAATGATGCTACAGTGTGGATAGGCTCCTAAAATGTGCCAGTATCAAGAGAAATTGATCAACCCTTGATAATTGTGCTTCAGAGGAGGAAGGCTGAAGAGTATGCCAAAAACTTAGTATTCATTGACACCACATATGCtgGGCCTTCATAAGGCGGATAAGGTGGATGGTGGATAAGGACCAGAAACTAATAAAATCAGTAAAAGAAGTCTTCCCTCAATCAAGCATTCTGCTCTGCTGGTCACATGTAACACAGGTCTCCCTATCAGCACTTCCACAGCTGACATGTCGAGAGCTCAGTGCTGACTGGCAAGTACTGACTGTGGGCTCTAGTGAACAGACCCACTCCAGCAGTCTGCCAGGGTCCTGGCTGGATCTCCACATGGCTCTGCTGCCTGGCCTGATCCATCCACTGACCAGAGCTAAAGGCTGAGCAGAATCTCAGGCCGAGTTACCACGCCTAATCCGATAAAGAAAAGGCCGATCATGATCTGGACCACCTGTgagtgcagagagagggggagagggcagAGAGGAAGTGCTCAGTGATACAACATGAGACAAATATGTGCACTTTCAATGgCTCGACCGGACCCCAGAACAACACTACATGGACGGAACGTGCAACAGCGCCCACCACTCAAGGTATATGTAACTGTGCAAGGAAGACCCCCGCTCGGAGGATCTCAGCTATCTTCTTTTCCAGTGCCAGCACCAGCGCCCCGTCGGCCAGCTGGGAGCCCAACAAGACCACAGGTGCAGCTCCATGATGGTAGCCTATGGAGGGGAAAGCAGGACACACGGCAGCAGCTTCGAAACCCAGGGACGACACAAAAGCTTTTATTGTCCAGAATTACAACTTGCTGCTGCAACCGGGGTCCACTCGTGGATAAGTACTTAAAAAGAAGAACACATATCATGAAagacagcacacaaacacttttacTACCCAATTATCCTTACCTGCAGTTCCAAGTGGAGACCTGATTGGCCAGTGAGGGCTGCATGCATCACACCTACCTGtcatggtttgttttgttgctgctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173078 lncRNA upstream 2448 21231980 ~ 21267912 (+) True G137631
TU173094 lncRNA upstream 17365 21245663 ~ 21252995 (+) False AMCG00012546
TU173083 lncRNA upstream 49316 21220199 ~ 21221044 (+) True G137634
TU172996 lncRNA upstream 230611 21001968 ~ 21039749 (+) False AMCG00012539
TU172927 lncRNA upstream 513096 20757030 ~ 20757264 (+) True G137539
TU173107 lncRNA downstream 14813 21308218 ~ 21309033 (+) True G137645
TU173146 lncRNA downstream 308594 21601999 ~ 21602314 (+) True G137669
TU173237 lncRNA downstream 486661 21780066 ~ 21786045 (+) True G137749
TU173242 lncRNA downstream 505098 21798503 ~ 21813863 (+) True G137754
TU173251 lncRNA downstream 542837 21836242 ~ 21958354 (+) True G137761
AMCG00012546 mRNA upstream 17357 21245907 ~ 21253003 (+) True AMCG00012546
AMCG00012542 mRNA upstream 103583 21148238 ~ 21166777 (+) True AMCG00012542
AMCG00012543 mRNA upstream 157413 21109538 ~ 21112947 (+) True AMCG00012543
AMCG00012544 mRNA upstream 161112 21105119 ~ 21109248 (+) True AMCG00012544
AMCG00012538 mRNA upstream 219555 21044249 ~ 21050805 (+) True AMCG00012538
AMCG00012549 mRNA downstream 6659 21300064 ~ 21307188 (+) True AMCG00012549
AMCG00012550 mRNA downstream 21630 21315035 ~ 21317648 (+) True AMCG00012550
AMCG00012553 mRNA downstream 141040 21434445 ~ 21436426 (+) True AMCG00012553
AMCG00012555 mRNA downstream 145078 21438483 ~ 21443188 (+) True AMCG00012555
AMCG00012557 mRNA downstream 197444 21490849 ~ 21491478 (+) True AMCG00012557
TU173085 other upstream 39524 21224741 ~ 21230836 (+) True G137636
TU173082 other upstream 51197 21213597 ~ 21219163 (+) True G137633
TU173010 other upstream 211097 21056695 ~ 21059263 (+) True G137583
TU172848 other upstream 829690 20430925 ~ 20440670 (+) False AMCG00012521
TU173102 other downstream 9820 21303225 ~ 21316451 (+) True G137644
TU173256 other downstream 561301 21854706 ~ 21876542 (+) False G137764
TU173274 other downstream 638890 21932295 ~ 21958158 (+) True G137775
TU173418 other downstream 1272019 22565424 ~ 22566106 (+) True G137899
TU173473 other downstream 1524548 22817953 ~ 22818458 (+) True G137947

Expression Profile