Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00013845 |
| length | 1037 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 9 |
| gene id | AMCG00013845 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 45316447 ~ 45329179 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0000165 | MAPK cascade | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004707 | MAP kinase activity | molecular_function |
| id | description |
|---|---|
| K04441 | P38; p38 MAP kinase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU58833 | lncRNA | downstream | 48051 | 45268054 ~ 45268396 (-) | True | G47185 |
| TU58826 | lncRNA | downstream | 211560 | 45104223 ~ 45104887 (-) | True | G47180 |
| TU58812 | lncRNA | downstream | 349519 | 44966010 ~ 44966928 (-) | True | G47168 |
| TU58806 | lncRNA | downstream | 352967 | 44961849 ~ 44963480 (-) | True | G47162 |
| TU58794 | lncRNA | downstream | 506571 | 44809645 ~ 44809876 (-) | True | G47153 |
| TU58873 | lncRNA | upstream | 14122 | 45343301 ~ 45344015 (-) | False | AMCG00013846 |
| TU58925 | lncRNA | upstream | 293336 | 45622515 ~ 45622755 (-) | True | G47259 |
| TU59047 | lncRNA | upstream | 496544 | 45825723 ~ 45826654 (-) | True | G47358 |
| TU59048 | lncRNA | upstream | 498786 | 45827965 ~ 45828251 (-) | True | G47359 |
| TU59058 | lncRNA | upstream | 516670 | 45845849 ~ 45854800 (-) | True | G47365 |
| AMCG00013847 | mRNA | downstream | 746 | 45315172 ~ 45315701 (-) | True | AMCG00013847 |
| AMCG00013844 | mRNA | downstream | 1622 | 45295506 ~ 45314825 (-) | True | AMCG00013844 |
| AMCG00013842 | mRNA | downstream | 27845 | 45279776 ~ 45288602 (-) | True | AMCG00013842 |
| AMCG00013836 | mRNA | downstream | 582702 | 44730857 ~ 44733745 (-) | True | AMCG00013836 |
| AMCG00013835 | mRNA | downstream | 638948 | 44671088 ~ 44677499 (-) | True | AMCG00013835 |
| AMCG00013846 | mRNA | upstream | 9680 | 45338859 ~ 45343600 (-) | True | AMCG00013846 |
| AMCG00013843 | mRNA | upstream | 30008 | 45359187 ~ 45373711 (-) | True | AMCG00013843 |
| AMCG00013856 | mRNA | upstream | 275647 | 45604826 ~ 45615255 (-) | True | AMCG00013856 |
| AMCG00013859 | mRNA | upstream | 286956 | 45616135 ~ 45621865 (-) | True | AMCG00013859 |
| AMCG00013861 | mRNA | upstream | 307749 | 45636928 ~ 45638791 (-) | True | AMCG00013861 |
| TU58280 | other | downstream | 2615379 | 42699506 ~ 42701068 (-) | True | G46742 |
| TU57875 | other | downstream | 4707919 | 40603601 ~ 40608528 (-) | True | G46423 |
| TU57869 | other | downstream | 4729055 | 40586816 ~ 40587392 (-) | True | G46418 |
| TU57809 | other | downstream | 4887822 | 40386061 ~ 40428625 (-) | True | AMCG00013730 |
| TU57766 | other | downstream | 5041349 | 40273391 ~ 40275098 (-) | True | G46333 |
| TU58927 | other | upstream | 294059 | 45623238 ~ 45623895 (-) | True | G47261 |
| TU59115 | other | upstream | 594743 | 45923922 ~ 45924348 (-) | False | AMCG00013882 |
| TU59142 | other | upstream | 634712 | 45963891 ~ 45974311 (-) | True | AMCG00013883 |
| TU59204 | other | upstream | 746250 | 46075429 ~ 46083542 (-) | True | AMCG00013890 |
| TU59251 | other | upstream | 831360 | 46160539 ~ 46163487 (-) | True | G47501 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00006225 | False | 1838 | mRNA | 0.49 | 12 | NC_007122.7 | 2710569 ~ 2758059 (+) |
| grasscarp (Ctenopharyngodon idella) | CI01000052_02327973_02342338.mRNA | True | 1083 | mRNA | 0.48 | 12 | CI01000052 | 2327973 ~ 2342338 (-) |
