RNA id: AMCG00013835


Basic Information

Item Value
RNA id AMCG00013835
length 2979
RNA type mRNA
GC content 0.58
exon number 11
gene id AMCG00013835
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44671088 ~ 44677499 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAAACGGCAGCTGTGTGCTGATAAAGTTGCGTCCTTCAAAGTTCTCAACCATCGCGATATTtcgttttgttttcaaaatggcGTCCCCCATGAAGAAGGCGGCGCACGATATTGAGACGCGGAGGAGAACCGACGATGTTTTGCTGTCGGAGGGGCTCGACTTCTCCTCCCTGCTGCTGTCCCAGCCCGTGCTGGAGGGGCTGACGGCCTCCGGCTTCCAGAAGCCCTCTCCCATCCAGCTCAAGGCCATCCCGCTGGGGCGGTGCGGACTCGATCTGATTGTTCAGGCCAAGTCCGGCACAGGAAAGACCTGCGTCTTCTCCACCATCGCACTGGACTCCCTGCTGGCGGACAACCCGGCCACACAGGTTCTGGTCCTGGCGCCCACCCGGGAGATCGCAGTGCAGATCCACTCGGTCATCACGGCCATCGGCATCATGATCGAGGGGCTGCAGTGTCACGTGTTCATTGGGGGCACCCCTGTGAGCTTGGACAAGACCCGGCTGAAGAAGTGCCACATCGCCGTCGGGTCCCCAGGTCGTATCAAGCAGCTGATCGAGATGGGGTACCTTTCCACCGCCAGCATCCGCCTGTTTGTCCTGGATGAGGCGGACAAGCTGCTGGAGGAGGGAAGCTTCCAGGACCAAATCAACTGGATCTATTCCTCCTTGCCTGTCAACAAGCAGATGTTAGCGCTGTCGGCCACTTACCCAGAATCCCTAGCTCAGCACCTGGCGCGCTACATGAGGGATCCCACCTTCATCAGGCTGAACCCCTCGGATCCCGGATTGATCGGGCTGAAGCAGTACTACAAAGTGGTGCGGTCCCACCCGATGCCGCACAAGATCTTCGAGGAGAAAGTGCATCATCTGTTCGAGTTGTTCGGCAAGATCCCCTTCAACCAGGCGCTCGTGTTCTCCAATCTGCACAGCAGGGCTCAACATTTGGCTGATATCCTCACATCAAAGGGCCTCCCTGCTGTCTGCATTTCAGGAAGTCTGAGTCAAGACCAGAGGCTGCAGGCGATGTCCAAACTGAAGCAGTACCAGTGCCGGGTGCTCATCTCCACAGACCTGACGTCCAGAGGGATAGATGCCGAGAAGGTCAACCTCGTCATCAACCTGGACATCCCGCAGGACTGGGAGACGTACATGCACCGCATCGGCCGGGCGGGGCGCTTCGGTACCCACGGCCTGGCAGTGACCTACTGCTGCCACGGAGAAGAGGAAAACAAGATCATGTCCATCGCGCACAAGTGCAGCCTGAGTCTCCTGTGTTTACCAGACCCCATTCCGCCTGGATTGATGGAGGAGCCCTCGGACTGGGCCGTTACCGTAGAAAGTATCAAAACGGATCCTGATCTCGGAGGGGCCATCGAGGCTGAAAACACTGGGGGCCTGATTTCCCCTCCTGGCGCCGACACCAGCCCGGCCAAGTCCAGAGTTCTGAAGAAGCCCCCAAAGAGAGCCGCAAAGCAACCCCCTCTAGATCAGGGCGCGGCACAGGAGGCTGTGAAGTCTGTGAGTGTTTCTATTCGCAAGGAAACCCCTGAAACCCGCTTACCCAGAGCCAAGCCAGGGCCACAGGTCCTCAAAACCGTAGCCCCACAGGGACTGGAGAGGAAAGCTCTGCAGGACGCTCTGCCCAAAATCCCCCCACTGCCCTCCTTCAAAGCCCGACCCCCGCATCCCATGAGCTTCGAGGAGCTGGTGGCCGACTACGACTGCTTCATCACGGACGGGCCCGGGCGGTCGGTGGAGATCATCCGGCAGTTCACCGGCCCAGACAATGGGCAGTGGACAGAGGAAATGCAAGACCCAGAGATTCCACCGAATGCTGGATCCCGAGAGGTGGTGGACGACCACCGTGCGCCCGAGAGAGCCGTCAGCACGTCCCCGTCCCGGCTCGCGTCTCAcggcagcagcagctcctccgACGTGTCCTCCGACAGGAACGCGGACACGGACACGGGCGCGGGTGCCGACACGGACGGGGAGCTGTCCTCCGAGCAGGGGGGAGATGTTTGGGCGCCGCCGAGTCGACCATCGAGGTTGAGCAGAGAGAATCTCCGGCTGCTGGAGCCCGTCGGGCCGATGCGCCACCCTGCCCAGCCGGCCGCCCTGCCCACGCCCGAACCCGCCGCTGCTCTGAAGCACCACGCCCCAGCGTCGCCCCACTTCGAACGCCccaagaagaaagaaacaaaacgcGTCTCGTCCCAGGAACCGCGCGCCATCCCAGACTGTGAGGGACCTCCAGACGAAACGCCCAGGGATGTGCCTCCGACTCCCGTGAGCAAAAGCCACCAGGAGTACTGGCAGGCGTATTACCAGGCCTGGCAAGGATACTACGCTGCAATGGCCCCGCCTTCCAACCCCATGGCCTACAGCTGGATGGCGGCGTATCGTATGAACGCCGTGTACATGGAGGAGCTGCTCAAGCGATAGCACGTGGCTTCTCAAGACGTCTTCTCAATGTGGATGAAATGTCATATGATTACAAATCTCCATCTCCGTGGCGTTTCGCAAGTACGAGTACGGGCCGAACCAAAGCAGCTCTTCCACCCGCCTCGGAATCGCAAATGCCAAACTGGTGCCCCTTTTGTTTCGCTCAAGAAGTTCTAGAAAGTGTCTGACATAAAAGTAAACTGCCTTACGGTGccagtttgtaatttgcagttcgGCAACAGGTTCGAGTTATTTGACCCCGAGTTACGgctgtttttcccccacattCGGCAGTCTATCCTGTCCGCTACCTACTGCCGCTCCAGCAGTGACGCCTTCACCGATCCAAGGCCCCAAACCTGCAGGGGAAACCTTTCTGTATGAATTTTTCACAAGTGTACGTTTTCCTTTTCATGGCAACAGAGATGTTGGCAGAAATGAAAAGTAAGATCTTATGAAGCACTTcgatattgtaatgttttttattattcatgaacTGTTGAATAAATGCCTGAATCCGTACGAGGTGC

Function

GO: NA

KEGG:

id description
K13131 DDX20, GEMIN3; ATP-dependent RNA helicase DDX20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58743 lncRNA downstream 173783 44496986 ~ 44497305 (-) True G47117
TU58735 lncRNA downstream 379301 44289055 ~ 44291787 (-) True G47109
TU58721 lncRNA downstream 447704 44222386 ~ 44223384 (-) True G47096
TU58707 lncRNA downstream 522157 44125766 ~ 44148931 (-) True G47082
TU58676 lncRNA downstream 547882 44116240 ~ 44123206 (-) True G47055
TU58766 lncRNA upstream 20728 44698227 ~ 44699767 (-) True G47139
TU58794 lncRNA upstream 132146 44809645 ~ 44809876 (-) True G47153
TU58806 lncRNA upstream 284350 44961849 ~ 44963480 (-) True G47162
TU58812 lncRNA upstream 288511 44966010 ~ 44966928 (-) True G47168
TU58826 lncRNA upstream 426724 45104223 ~ 45104887 (-) True G47180
AMCG00013832 mRNA downstream 354404 44291848 ~ 44316684 (-) True AMCG00013832
AMCG00013830 mRNA downstream 415046 44242515 ~ 44256042 (-) True AMCG00013830
AMCG00013831 mRNA downstream 468641 44186012 ~ 44202447 (-) True AMCG00013831
AMCG00013828 mRNA downstream 493462 44160652 ~ 44177626 (-) True AMCG00013828
AMCG00013825 mRNA downstream 664455 44004877 ~ 44006633 (-) True AMCG00013825
AMCG00013836 mRNA upstream 53358 44730857 ~ 44733745 (-) True AMCG00013836
AMCG00013842 mRNA upstream 602277 45279776 ~ 45288602 (-) True AMCG00013842
AMCG00013844 mRNA upstream 618007 45295506 ~ 45314825 (-) True AMCG00013844
AMCG00013847 mRNA upstream 637673 45315172 ~ 45315701 (-) True AMCG00013847
AMCG00013845 mRNA upstream 638948 45316447 ~ 45329179 (-) True AMCG00013845
TU58280 other downstream 1970020 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 4062560 40603601 ~ 40608528 (-) True G46423
TU57869 other downstream 4083696 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 4242463 40386061 ~ 40428625 (-) True AMCG00013730
TU57766 other downstream 4395990 40273391 ~ 40275098 (-) True G46333
TU58927 other upstream 945739 45623238 ~ 45623895 (-) True G47261
TU59115 other upstream 1246423 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 1286392 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 1397930 46075429 ~ 46083542 (-) True AMCG00013890
TU59251 other upstream 1483040 46160539 ~ 46163487 (-) True G47501

Expression Profile