RNA id: TU58735


Basic Information

Item Value
RNA id TU58735
length 2733
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G47109
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44289055 ~ 44291787 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGAATAACCTGACTCTCACTAATGAAACTGTCATTTATTGTCGTGTACATGAAGTCATATTGTGTAGTTTTCTTGGTCATAAGATACTAGGGCTTTGTAATAAGCCCAAAAGGAAATGCAGGAATCTGTAATGTTGTTTCTACTCAAGATAGCACCTCTGAAATCACATGGCTATGGATGATATTTCttatgatttgatttaatttgatactGCAATGGTCTACAATGGTTTTCATTTGACGTATATTGAAATTTTGgttctaaacaaaaaataagaggaaaaaaaaggtgcAATGTTCAGGTGAAACAAACTATAGTTACAATGCAATGCTACTAACAAAGACTTTcatattaatatgattttggTGCCGCAATATAAGCAAGGTATACTTTCAATTTTGAGACTTTGGCAGCtaatattttttccaagaaTCTTAGTAAAACACGTCTACGTAATACATACCATTACTGTATTCAGCGGGTTGGTGCCAATAGTCACATTTTAGGATAGGAAATTATTTGATCTGTGCCGAATAGGAAACTTTTATGTTAACCTAAACGTCTTCCACATGGAGATGTTGTTTAGCCATGCTTTCTTTTTGCCTTTCTGTGGTTaaacatatgtacatatacacatgcacaattTGGTATTCAAAGAGGATAGGGGGGAAATGAAGTCACCAGATAACTCCCAAGACCTCACTCAGAAGgtaaaaacatttccagttCCGACTGTTTTCGTGGAtctaaaaagaaagacagcgcTGCCTCCTGGTGGACTTTGAACAAACACCTTTTAAACAGCGTGAAAGACCTCTTACAGAACGGCAAAATATATAGTGACACTGTCATTTGCCTCCTATATACCTCTCATGTGATCATACGAAGGGGCTGTTCTGAATTGCCATTATGTATTTTGCTCCATTATGCAATTAGCAAAACAATTAGCAACATAAGCAGAGAGAAAAAGGGACACATTGGGAACATGTCTTTGTGTTACATGTTCTCACTTTACAAGTATcaagacattacattttaaacctaCGTTCATCATTTTTGTTggcttgtttttgattttgtaagaGGAGGATCTTTTCATTACATACatctttgcttgtttgttgtcatAATCAGCATCTCTTTTGCTCCTGGCTCAGTTCTGAATTTAGAAATATGCAGAAGCGCCTGTAACAGTAAATACCTATAGATACTGACACAATCGCTGCCCAGAAATGCAAACAGTGCTCTTGAATTCTtcagtataatttgttttctcatgtcatttttattgttcttgtcagtacagtacagtaaaaacgacatgagaaaataaaaattgatattaaaaaaatctaaagttgCATAATTATTACGTTCTTATTGGTCACTGAATTCAAAATATCTAAAGGTGGATTCCACATTGTGGAAGGTAAGTGGGACAAGAAAACGTGACATAAACCCACTGAGAAGTCCAATGACCAGACAGATGTTCTCACATCTTTACTGTGATTCCCAACAGTGAGATTAAGAATACAACTGAGCCTTAATTGAGCCTTGATGTCTCTCAAAAAGGACctaaaacattttggaaacactttataattttgtttttgtgctgtaCAGCTACCTGTCTCTTAAACCAAGAGATGAACAGTGAGATTTACCCTAAAAGGCTGACCTTATGTTTCCCACaatataaaactggaaaaaggtTAAAAGAACCATTAAACAATAAGAGAACAATTAAAGGTTCTggacatttattattagaagcAAAACAATCAGCTCTCGGAGTGGTTAAATTGTGGTTTTGCTTACATCTAGCTTTTTAAGATTTACTTCCTCTTTCAAAAATGTGTCAGCTCTTTCACTTGACTTTTTCCAAGCCAGCGTTGGTTTGCTGATGCTGAGCTGCTCAAAAATGCAGAATATGTCAAGTTTATTCAAAGCCCAATCATTTAGatctgcattgatttatttgaatgaaaacaGGCCTTTAAATTGTTAACTCAAACTGCTGCAATGAACACAGTGTTGTAACACTACTGGGTTCCCCACAGAGGTGAAGAACTCAACCTGGTGAAGAGAGACGGGTTTTTACCAGCATAGGCAACAGAGagtcctttattttttccattttatgcaATTTTTTATGTGATACAGAGAACTTAAAGGAAAGAAACcttaaaatgtagcactacactttTTCACCTGTTTCTCCAGCTGGTTGATAATTACTACTGTTTTGTAATGGTTAACTTGTAATATAGAACAGATAAGCCAAAGCATACTTATTGGAAATAGAGATTTTTTTCTTAAGCGGGGAAGTAGGATGGGATATTTTTCAGAGCCCTACAATTTGCCCTTGTAAAGCCACACAgaagtatgtatttgtgttgttgttggatGGGCCATTTTCTTAAGATCAATCTGTACACCTAAAATAACATGGCtacaatatgtattgtatatggaaatatatagACAAAGCACATTCTTTAACCGCAATAATCGGTGCactaattaaatgcatgcatatttGTACTTTGCTCAGAGATACTGATGACTTGTGTTTCACTCAGTGCCGTTTCTCAATTGAACTGCTGCAGCTGAAAGATCACGCTGTTCAATATATATGCAGGTTCAAGTGCCTGTGAAATGGCATGATGGACTTTACATACCGCCTGGAAAATGCTGCCTCTGACTGTATTTACATCACATTCAACCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58721 lncRNA downstream 65671 44222386 ~ 44223384 (-) True G47096
TU58707 lncRNA downstream 140124 44125766 ~ 44148931 (-) True G47082
TU58676 lncRNA downstream 165849 44116240 ~ 44123206 (-) True G47055
TU58656 lncRNA downstream 369093 43919661 ~ 43919962 (-) True G47041
TU58613 lncRNA downstream 675804 43609361 ~ 43613251 (-) False AMCG00013820
TU58743 lncRNA upstream 205199 44496986 ~ 44497305 (-) True G47117
TU58766 lncRNA upstream 406440 44698227 ~ 44699767 (-) True G47139
TU58794 lncRNA upstream 517858 44809645 ~ 44809876 (-) True G47153
TU58806 lncRNA upstream 670062 44961849 ~ 44963480 (-) True G47162
TU58812 lncRNA upstream 674223 44966010 ~ 44966928 (-) True G47168
AMCG00013830 mRNA downstream 33013 44242515 ~ 44256042 (-) True AMCG00013830
AMCG00013831 mRNA downstream 86608 44186012 ~ 44202447 (-) True AMCG00013831
AMCG00013828 mRNA downstream 111429 44160652 ~ 44177626 (-) True AMCG00013828
AMCG00013825 mRNA downstream 282422 44004877 ~ 44006633 (-) True AMCG00013825
AMCG00013822 mRNA downstream 578060 43703998 ~ 43710995 (-) True AMCG00013822
AMCG00013832 mRNA upstream 61 44291848 ~ 44316684 (-) True AMCG00013832
AMCG00013835 mRNA upstream 379301 44671088 ~ 44677499 (-) True AMCG00013835
AMCG00013836 mRNA upstream 439070 44730857 ~ 44733745 (-) True AMCG00013836
AMCG00013842 mRNA upstream 987989 45279776 ~ 45288602 (-) True AMCG00013842
AMCG00013844 mRNA upstream 1003719 45295506 ~ 45314825 (-) True AMCG00013844
TU58280 other downstream 1587987 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 3680527 40603601 ~ 40608528 (-) True G46423
TU57869 other downstream 3701663 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 3860430 40386061 ~ 40428625 (-) True AMCG00013730
TU57766 other downstream 4013957 40273391 ~ 40275098 (-) True G46333
TU58927 other upstream 1331451 45623238 ~ 45623895 (-) True G47261
TU59115 other upstream 1632135 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 1672104 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 1783642 46075429 ~ 46083542 (-) True AMCG00013890
TU59251 other upstream 1868752 46160539 ~ 46163487 (-) True G47501

Expression Profile