RNA id: TU57875


Basic Information

Item Value
RNA id TU57875
length 3729
RNA type TUCP
GC content 0.42
exon number 3
gene id G46423
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 40603601 ~ 40608528 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcattaaaactttattttattttttttacagtgcatgAACAGAATGCCATGACCAGAAGTTAAATTTTCTgtattctgcttttaaaatgttttctgttaattacttaaaaaaataatggaacGATTTACAGATCTCTTATTTTTCTGAATGAGAATTCTGGAAGTATTTATAAAGGtgctgtacaatatataaacatttacaactACCACATAATGTAGAGACCAAAAGGCTTCTTTGTCAAAGCAATGCAAGGCcacattattatatacagaCACTGAGATGGGAACTGGGAAGCAGGGAGAGGAGGGCATACAAGACAATACCAGTGCAGGAGACATCGAGGTGATTTCTCAAGATCGTCCCAAAGAAGGAAACTTTCCTTCTCTGCGGCAGACTGGAGCACAAAAGAATATCCGTTTGACATGGTCATCTGATCAATGTTGAGGGATGGGGTTAGACTTTATGTTCAGGTCTGTGGTAAGGCTTAGAGTCAGGAGAAGTTTTAGGTTTAGATCAGGGGTTTttaaaccggtcctggagtaccccctgGTTTAGATCAAACCCAGGTCCTGGAGGgccagtgtcttctgttttgtgTTCCAACTCGACTTCTCTTACTTAGCTAGTTATTTTATCTATTAGACATGTATAACCAGAGGCtcacaaaaaaaagtctgtggTTTCCTACATGCTTGCATTCAGAGATCTACatgaacatgaaaaataaactatgaatCTGTTGATTATTACACATCTGAAATGACACAGGAAGTGGTTTTCCATTCTGCcagtttttcatttgatttgtcCCAGGTCCTCTCTAACTACTTTGTAAGTGACTAATTGCACACTGAACTGTCAGTGTGGTTtgcattttcacattgtttatGTGCATGCATTCCTGCTTACCACTTATTTAAACACCTTATACTGCATTGCAGTCTGTTACAGTTGATTacttaaaatgatttttaaaaattctaGATACTCAAACTAACTTAATATGCAGCCTGTAGAGATGCATTTAATTCATCCAGTAAATCAGCTAATTGGATCAATTAAGTAACTAGAAACTGGAACCAAAGCCAGAAGATACTGCGGCCCTCCAGAAATGACTTTGAGAGGGTTGAGATGTTGATGTGGATGGCAGGAGTTGTGGCCAGATGTCCCGAGAGACAATATTTCATGGATATTCCATTCTGCGGTTTGCACTTCCTGAAAAATAGTCAGCTGGTTTCCTCATAAAGCAGATTTTAGTTCAGTTTTAGTCGATGGAGGGAATTGACCAACATTggcaattatacaaaaatatttaaggGACTTCTTTGTTTAACCGCTTTGATATTTCCACTTTAGTTTTACATGTGGAAGGTTCACAGTACTTGAACTAAACTGCTGTACCATCAATGGCaacagaaacatacatacatagcaCACCACGTAGTCTTGGGTTTCACATAGCTCTTATTTtagcacatttctttcttttatattttgcaaCACTTTGGGAgtagaataatttaattaagcaCTGACTGTGTCAATAAATTCCATTAGGAACCAAGggtaattaatattattcactTGGATGTCATCCTGCACCTTGAAATGTTAAGTCATGCGCTAGTGAGCCAAATTCATTTTCACCCAAATGTTGTTTAGGAAATACACTGCTAAatgatacacacatttaataaaataccatCCAAGCTACtgaatttctaaaaaaaaaaacacatttctgtttgctTGTAGGATACACATTTGTTTGAGGACCTAAGACAGTTTGTTACAGCAAACACCATAAAAGGATGAAGAAGTGACTGTTGGAGCACTATATATATCGCACTGCGGAATGGCTCagtatgaatacatatttatttatatttatctcaATAAGTTAGATATGCTTTTTCATATACATAGTAAACAATATACTTAAACACAAGTTTCTGGTCTGTTAAAGAGATATCAAgcctatatgttttttttagattctAGTCAAAACGACTCACAAAGCTAAGGAATGAGTTTGGATACTGATTTTCAGATATGTACACGATTGGAAATCCTGGGGATTTGAGACGGACACAGCAGGTGGGACCTTGGAGTCAAAGGTACGCAAGCAAAAACACGGGAAGAACAATATACGCATGCAGTAAAACAAATCCTTCATAAAGTACAATTTTGAAAGCATAACGTGTACATGTCTGTACACAAGATGGCAGACCTTCGAGATGTATACCATCCTTCATTTGGTAGATATGTCTTTCTAATTCATTGCATATGGAACAGTTCAGTGAAATTAAAGGTAAGCAGGTACAGTTTTGCATTATTTGGTTTCCTTTCAGAATCCCCTATTGGCACATATCAGGACTGTTTGGAGTTGTTGGCTTTACAGGTTTCACAAATATCAACGCAGCCTTAATTTCATTCAACATAAAAGCTTCTACGCATATAAGTAAGGCAGACGAACAAGGAGAACACAGATGCTACAGTATGTTGATGTGGGGAAGGGAAACAAGTAttcaaaatcaatataaatccCTTAAATCAGTAATATAGAACAAAAAAGCCCCCTTTGTCCCATTTGTGCAGTGACACATCCAAAGACACCTCAGAGAAGTGAAATATCCAGTGTGTGTTGTCCTCACTATTCCAGACTCTTTGGCTCAGGTAGTCTCTCAGTTCGTGGCTGGATTTTGTCAGAGCTGGGCACCTTCCACGGCCCCGGTGTGATGGGGGCTTTCCTGACGCTATTTGGGATGCCATTGCCAGAGCCTTCTATAGCCGCAGCAGGaatcctgttatctttctcgTGCTGCTCATCCGTGACTTTCCCCTTTGCCTGACCGACTGCTCTGTCCTTCTCTTTATCTCTGCGTCCTGCGTCCTCCGgctctttctgtgtcttgtcCTTCCCTGCGTGGGAGCGAGACCGTGGCACTTTGGAGTCTCTGTCCGCGTCCTCTCGGTTGTCTGTTCCCCGGCGCTCGGTGGAGTTCCTTGCCGACTCCTCTGCACTTTTCCCCGACTCTTTCTCTGCCGGTCCGCCTTCTCTGTGTCTGGGCTGCTCCTCCCTgcgtttcctgtctctgttATCGGCAGGCTggttgtgtttgtctgtcttcaCCTGGCTGACCCTGTGTTGCTCCTTAGTGACCGGATCTTGTTCCTTTTTGGGAGACTTCTTTGGGCTTAAGGACCTCTGCCTTCCCTCTTTTGGATGGCGGGATTTCTTGTCCTTGCTTCTGGTGTCAACTGGACTGACGGACCGGTTTCTGCCGCTGGGAGGAGTGTTCCTCTCCATCTTTCTTGGGCTACGCGATCTGTCTTTAGTGTCTGCTTTTGCACTGCTGGTTTTCTTTGGGTTGGCAGACCTGGCCTTGGGAGAAGCCTCAAGCTCACCCTTCTTACCAAGCAGAGCTCCAGGACTGGTGGATCGGTCTCGTTTCGGTGCCGTGGCTTTGCTGGCCGGGTCTCTGGAAGGGTTCTGGCCTATCCTGTCACTATCCGCAGGACTGGCCGTCCCACTGGCTCGGGGCGGAAGCGATCCAGAGGGCAGGGAGGTGGCGTCCCAGTGGTGGGGGTCCTCTCTTCTCACAGCGGTGGGGGAGGAATCCAAGATGGAGGTGGAGTTAAACGATGACCACGGTGAGAGCGGCTCTTCAGAAGCTGAAACCTCATTCTGAAAGCTGGTGGGTGAAACATTCATTTTATCCATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57872 lncRNA downstream 2069 40601198 ~ 40601532 (-) True G46421
TU57871 lncRNA downstream 5703 40597358 ~ 40597898 (-) True G46420
TU57870 lncRNA downstream 10181 40593148 ~ 40593420 (-) True G46419
TU57842 lncRNA downstream 157207 40442310 ~ 40446394 (-) True G46395
TU57817 lncRNA downstream 184959 40416675 ~ 40418642 (-) True G46372
TU57881 lncRNA upstream 9815 40618343 ~ 40630486 (-) True AMCG00013732
TU57912 lncRNA upstream 374604 40983132 ~ 40983557 (-) True G46458
TU57913 lncRNA upstream 375105 40983633 ~ 40986274 (-) True G46459
TU57934 lncRNA upstream 444620 41053148 ~ 41061824 (-) True G46476
TU57946 lncRNA upstream 491175 41099703 ~ 41103966 (-) True G46484
AMCG00013730 mRNA downstream 190967 40392893 ~ 40412634 (-) False AMCG00013730
AMCG00013723 mRNA downstream 697933 39900104 ~ 39905668 (-) True AMCG00013723
AMCG00013722 mRNA downstream 707139 39876427 ~ 39896462 (-) True AMCG00013722
AMCG00013716 mRNA downstream 747281 39855358 ~ 39856320 (-) True AMCG00013716
AMCG00013718 mRNA downstream 765293 39837346 ~ 39838308 (-) True AMCG00013718
AMCG00013732 mRNA upstream 13709 40622237 ~ 40637228 (-) False AMCG00013732
AMCG00013733 mRNA upstream 32548 40641076 ~ 40647148 (-) True AMCG00013733
AMCG00013737 mRNA upstream 276426 40884954 ~ 40888451 (-) True AMCG00013737
AMCG00013738 mRNA upstream 281201 40889729 ~ 40927189 (-) True AMCG00013738
AMCG00013742 mRNA upstream 384261 40992789 ~ 40995408 (-) True AMCG00013742
TU57869 other downstream 16209 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 174976 40386061 ~ 40428625 (-) True AMCG00013730
TU57766 other downstream 328503 40273391 ~ 40275098 (-) True G46333
TU57492 other downstream 1820452 38782093 ~ 38783149 (-) False AMCG00013685
TU57455 other downstream 1902527 38697395 ~ 38701074 (-) True AMCG00013677
TU58280 other upstream 2090978 42699506 ~ 42701068 (-) True G46742
TU58927 other upstream 5014710 45623238 ~ 45623895 (-) True G47261
TU59115 other upstream 5315394 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 5355363 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 5466901 46075429 ~ 46083542 (-) True AMCG00013890

Expression Profile