RNA id: AMCG00013722


Basic Information

Item Value
RNA id AMCG00013722
length 2109
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00013722
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 39876427 ~ 39896462 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGCTCTTGCAGCCGGTGTCATTGAAGACGTTGGCGATGCTGAAGGCTGCCAGCATCTCCAGGAAGCAGCGCACCGCCACCACCAGGAAGTTAACACTGGCCAGGTGCAGAACGATGGCGTCAGCTGGCAGCAGCTTACGGTCGCAGAGGGCCAAATGGCAGAATGCCCACATCACCAACAGGTTGCCTGGCACCCCCAGCAATGTCAGGAAGATGGAAGTGCGTCTTGTGCTGAAGGCAGCTGGCTTCATCTGTCTGGACGTGGTGGGCATCCCAGGGAACCTGACCGTGCTCCTGTTCTTCTACTACCTGCGTCTGTCTGAGGGCCGGCTTCTCCCCAACGACCTCATCCTGATCAAGCTGGCGTTTGTCAACCTGGTGGTGGTCCTGTGCCGTGGAATCCCACAGGCCTTAACTGCACTTGGCATCCGGAACCTCTTTGGGGACAATGGCTGCAAAGTGGTCATCTATATCTACCGTGTCAGCCGTGCCATGTCCATCTGTATCACCTCCCTCCTCAGCTGCTACCAATGCATAGTCATCGCCCCTGGATCAACCCGGTGGATGGTGCTGAAGCAGAGGGTCCCCAGAAGTATCCCCCTGATCATCTTGCTGCTATACGGAATGAACATTATAATATACCCCACTTCACTGCTCTTCACTTCAGCAGTTCCCAACTCCACCATCTCAGAGTACACCCTGAACATGGAGTTCTGCATTGTGGTGTTCCCTGGCTTTCAGACGTACATGGCCTGTGGAATGATTTACATACTTCGTGATTTAACCTTTATGGGCATCATGGTTAGTGCAGGCTTTTACATTGTCCTGATTCTGTACCGCCACAGGAAGCAGATGAGGGGCATGCATGGCTCAGACCAGAACCAGAGAAAAACAGTAGAGGCGTCCAAGTCAGTGCTCATGCTTGTGACTATGTATGCAATTCTGTTTGGCCTGGACAATGTCCTGTGGGTTTACACACTCTGTGTCACCCGTGTCCACCCTGCTGTCTCAGACACGCGGGTCTTTTTTGCCTCCTGCTACTCCGCCCTCAGCCCAGTCTTCATCATCGCTACCAACAAAAAGTTTGCAGCCAGACTGAACTGCTTTTCCCATGGCcgggaagaaaaaagtaatactaCAAAGATGGAAGTGCGTCTTGTGCTGAAGGCAGCTGGCTTCATCTGTCTGGACGTGGTGGGCATCCCAGGGAACCTGACCGTACTCCTGTTCTTCTGCTACCTGCGGCTGTCCGACGGCCACCTATCGCTCAATGACCTCATCCTGAGCAAGCTGGCGTTTGTCAACCTGGTGGTGGTCCTGTGCCGTGGAATCCCACAGGCCTTAACTGCACTTGGCATCCGGAACCTCTTTGGGGACAATGGCTGCAAAGTGGTCATCTATATCTACCGTGTCAGCCGTGCCATGTCCATCTGTATCACCTCCCTCCTCAGCTGCTACCAATGCATAGTCATCGCCCCTGGATCAAACTGGTGGATGGTGCTGAAGCAGAGGGTCCCCAGAAGCATCCCCCTGATCATCTTGCTGCTCTACGTAATTAACATTATAATATACcccactgcactgctctacacttCAGCAGTTCCCAACTCCACCATCCCAGAGTACACCCTGAACATGGAGTTCTGCATTGTGGTGTTCCCTGGTTTCAAGTCATACATGGCCAATGGAGTGATTTACATACTTCGTGATTTTGTCTTTGTGGGCATCATGGCTGGTGCAGGCTTCTACATTGTCCTGATTCTGTACCGCCACAGGAAGCAGATGAGGGGCATGCATGGCTCAGACCAGAACCAGAGAAAAACATCAGAGGCGTCAAAGTCATTGCTCATGCTTGTGGCCATGTATGTCATCCTGTTTGGCCTGGACAATGTAATGTGGGTTTACACCCTCTGTGTCACCCGTGTCCACCCTGCAGTCAATGATGCACGAGTCTTTTTTGCCTCCTGCTACTCCGCTCTCAGCCCAGTCTTCATCATCGCCACCAACAAAAAGTTTGCAGCCAGACTGAACTGCTTTTCCCATGGCCGGGAACCAAACAACAGGACTACAGTTACCACCGTCTCTCACTTACCCACAGGGTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57688 lncRNA downstream 249237 39622363 ~ 39627190 (-) True G46263
TU57659 lncRNA downstream 314131 39562097 ~ 39562296 (-) True G46245
TU57648 lncRNA downstream 323182 39552251 ~ 39553245 (-) False G46240
TU57805 lncRNA upstream 485088 40381550 ~ 40381998 (-) True G46368
TU57807 lncRNA upstream 488887 40385349 ~ 40385758 (-) True G46370
TU57817 lncRNA upstream 520213 40416675 ~ 40418642 (-) True G46372
TU57842 lncRNA upstream 545848 40442310 ~ 40446394 (-) True G46395
TU57870 lncRNA upstream 696686 40593148 ~ 40593420 (-) True G46419
AMCG00013716 mRNA downstream 20107 39855358 ~ 39856320 (-) True AMCG00013716
AMCG00013718 mRNA downstream 38119 39837346 ~ 39838308 (-) True AMCG00013718
AMCG00013715 mRNA downstream 41671 39761339 ~ 39834756 (-) True AMCG00013715
AMCG00013717 mRNA downstream 127377 39748091 ~ 39749050 (-) True AMCG00013717
AMCG00013713 mRNA downstream 163070 39703860 ~ 39713357 (-) True AMCG00013713
AMCG00013723 mRNA upstream 3642 39900104 ~ 39905668 (-) True AMCG00013723
AMCG00013730 mRNA upstream 496431 40392893 ~ 40412634 (-) False AMCG00013730
AMCG00013732 mRNA upstream 725775 40622237 ~ 40637228 (-) False AMCG00013732
AMCG00013733 mRNA upstream 744614 40641076 ~ 40647148 (-) True AMCG00013733
AMCG00013737 mRNA upstream 988492 40884954 ~ 40888451 (-) True AMCG00013737
TU57492 other downstream 1093278 38782093 ~ 38783149 (-) False AMCG00013685
TU57455 other downstream 1175353 38697395 ~ 38701074 (-) True AMCG00013677
TU57301 other downstream 1392671 38478552 ~ 38483756 (-) False AMCG00013661
TU57307 other downstream 1392671 38478552 ~ 38483756 (-) True AMCG00013661
TU57286 other downstream 1425080 38448267 ~ 38451347 (-) False AMCG00013650
TU57766 other upstream 376929 40273391 ~ 40275098 (-) True G46333
TU57809 other upstream 489599 40386061 ~ 40428625 (-) True AMCG00013730
TU57869 other upstream 690354 40586816 ~ 40587392 (-) True G46418
TU57875 other upstream 707139 40603601 ~ 40608528 (-) True G46423
TU58280 other upstream 2803044 42699506 ~ 42701068 (-) True G46742

Expression Profile