RNA id: TU57659


Basic Information

Item Value
RNA id TU57659
length 200
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G46245
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 39562097 ~ 39562296 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caatccctccatcagtgctcagactgtgcgcaataggctgagagaggctggactgagggcttgtaggcctgttgtaaggcaggtccttaccagacatcaccggcaacaacgtcgcctctgggcacaaacccaccttcgctggacgtgatttcccgCAATACAGGAATAtaagtgttctgccatggccagcaaagagcccg

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57649 lncRNA downstream 8852 39545571 ~ 39553245 (-) True G46240
TU57648 lncRNA downstream 8852 39552251 ~ 39553245 (-) False G46240
TU57650 lncRNA downstream 8852 39552251 ~ 39553245 (-) False G46240
TU57651 lncRNA downstream 8852 39552251 ~ 39553245 (-) False G46240
TU57645 lncRNA downstream 31869 39528947 ~ 39530228 (-) True G46238
TU57688 lncRNA upstream 60067 39622363 ~ 39627190 (-) True G46263
TU57805 lncRNA upstream 819254 40381550 ~ 40381998 (-) True G46368
TU57807 lncRNA upstream 823053 40385349 ~ 40385758 (-) True G46370
TU57817 lncRNA upstream 854379 40416675 ~ 40418642 (-) True G46372
TU57842 lncRNA upstream 880014 40442310 ~ 40446394 (-) True G46395
AMCG00013703 mRNA downstream 150849 39408255 ~ 39411248 (-) True AMCG00013703
AMCG00013701 mRNA downstream 285448 39270881 ~ 39276649 (-) True AMCG00013701
AMCG00013700 mRNA downstream 293438 39266509 ~ 39268659 (-) True AMCG00013700
AMCG00013698 mRNA downstream 299450 39254843 ~ 39262647 (-) True AMCG00013698
AMCG00013699 mRNA downstream 307454 39233635 ~ 39254643 (-) True AMCG00013699
AMCG00013710 mRNA upstream 10728 39573024 ~ 39576044 (-) True AMCG00013710
AMCG00013709 mRNA upstream 31761 39594057 ~ 39597610 (-) True AMCG00013709
AMCG00013714 mRNA upstream 125401 39687697 ~ 39703006 (-) True AMCG00013714
AMCG00013713 mRNA upstream 141564 39703860 ~ 39713357 (-) True AMCG00013713
AMCG00013717 mRNA upstream 185795 39748091 ~ 39749050 (-) True AMCG00013717
TU57492 other downstream 778948 38782093 ~ 38783149 (-) False AMCG00013685
TU57455 other downstream 861023 38697395 ~ 38701074 (-) True AMCG00013677
TU57301 other downstream 1078341 38478552 ~ 38483756 (-) False AMCG00013661
TU57307 other downstream 1078341 38478552 ~ 38483756 (-) True AMCG00013661
TU57286 other downstream 1110750 38448267 ~ 38451347 (-) False AMCG00013650
TU57766 other upstream 711095 40273391 ~ 40275098 (-) True G46333
TU57809 other upstream 823765 40386061 ~ 40428625 (-) True AMCG00013730
TU57869 other upstream 1024520 40586816 ~ 40587392 (-) True G46418
TU57875 other upstream 1041305 40603601 ~ 40608528 (-) True G46423
TU58280 other upstream 3137210 42699506 ~ 42701068 (-) True G46742

Expression Profile