RNA id: TU57807


Basic Information

Item Value
RNA id TU57807
length 410
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G46370
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 40385349 ~ 40385758 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTAGTCTAAATCCCACTAGAAGAGAAATCTGAGAATACAAATAACCCATACAGATAATAGCACTGATTAcccaaaggaaaaataaataattaggcATTATTTCAATGCTCAAGATGTGCATTTTATAGATctgatcaatacaaaaaatgaagtgGTTTTAACATTCACTCAGCTTCTTTTCCCATGGAACAGCAATATgccacaaattaaaataagagcGATTCCAGGACCAGTGGTAAACGCAAGGATTAGCCAAGTAGTGGACGTCATGGGTTGGTCCTTCCTTTCtgaataaataagaacaatattaaattgtgttaatgGAGGATGTAGGGAGTAATGCTTGGCAAAGGAGGTAGgcttattaatgttttgtgacACTGGAATGAAATACAGGAGAGACCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57805 lncRNA downstream 3351 40381550 ~ 40381998 (-) True G46368
TU57688 lncRNA downstream 758159 39622363 ~ 39627190 (-) True G46263
TU57659 lncRNA downstream 823053 39562097 ~ 39562296 (-) True G46245
TU57648 lncRNA downstream 832104 39552251 ~ 39553245 (-) False G46240
TU57817 lncRNA upstream 30917 40416675 ~ 40418642 (-) True G46372
TU57842 lncRNA upstream 56552 40442310 ~ 40446394 (-) True G46395
TU57870 lncRNA upstream 207390 40593148 ~ 40593420 (-) True G46419
TU57871 lncRNA upstream 211600 40597358 ~ 40597898 (-) True G46420
TU57872 lncRNA upstream 215440 40601198 ~ 40601532 (-) True G46421
AMCG00013723 mRNA downstream 479681 39900104 ~ 39905668 (-) True AMCG00013723
AMCG00013722 mRNA downstream 488887 39876427 ~ 39896462 (-) True AMCG00013722
AMCG00013716 mRNA downstream 529029 39855358 ~ 39856320 (-) True AMCG00013716
AMCG00013718 mRNA downstream 547041 39837346 ~ 39838308 (-) True AMCG00013718
AMCG00013715 mRNA downstream 550593 39761339 ~ 39834756 (-) True AMCG00013715
AMCG00013730 mRNA upstream 7135 40392893 ~ 40412634 (-) False AMCG00013730
AMCG00013732 mRNA upstream 236479 40622237 ~ 40637228 (-) False AMCG00013732
AMCG00013733 mRNA upstream 255318 40641076 ~ 40647148 (-) True AMCG00013733
AMCG00013737 mRNA upstream 499196 40884954 ~ 40888451 (-) True AMCG00013737
AMCG00013738 mRNA upstream 503971 40889729 ~ 40927189 (-) True AMCG00013738
TU57766 other downstream 110251 40273391 ~ 40275098 (-) True G46333
TU57492 other downstream 1602200 38782093 ~ 38783149 (-) False AMCG00013685
TU57455 other downstream 1684275 38697395 ~ 38701074 (-) True AMCG00013677
TU57301 other downstream 1901593 38478552 ~ 38483756 (-) False AMCG00013661
TU57809 other upstream 303 40386061 ~ 40428625 (-) True AMCG00013730
TU57869 other upstream 201058 40586816 ~ 40587392 (-) True G46418
TU57875 other upstream 217843 40603601 ~ 40608528 (-) True G46423
TU58280 other upstream 2313748 42699506 ~ 42701068 (-) True G46742
TU58927 other upstream 5237480 45623238 ~ 45623895 (-) True G47261

Expression Profile