RNA id: TU60104


Basic Information

Item Value
RNA id TU60104
length 3301
RNA type TUCP
GC content 0.45
exon number 3
gene id G48142
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48754953 ~ 48760712 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGAGGGGGCTGTGGACGCTTCTTGCGTAACCCCACAGCTGCAAAATCTGATCTAGGACCAATCAGGCCTTTTCTTGTTCAATACCTCCTCTTATCGAGCACATCCAGCTCCTGCTCTGTAATCATGTTCTTTaaagttttcagattttaatttcctccacagcagaaaacaaataaacatctttAGACAACACgcagagaaaggaaaaggaatCATTGCAAAGGGATGGACTTTGAAAGTTTCGGTTTTAATGTGACAGTATGTGATTTTACACCAACacaaaagtgatttttaattCTCATTGATTTCTTTATTGGAAAAGATGGCGACAATAATCATGACTTTAAAAATAAGTGACTTATGCTTCCATGCACATCTCCAAAATttgtattctctttttttttcttcactcagtttccttttatttcatGATGGAAATGGAAGGTTAgattgttgctttttttcatttaaaaaccaaTGGAAAGATATACTGGAATGAGAGGGTGATAGTCCATCttcagagaaataataataaaaatcatcatCACACACAAATCATAGAACACGTCACAGTCGACTGTGGAGTTTGCATTCGTCAGGCCAATGGCTCCTAATTAAAAAcgttataatttgttttaagcaAATGATCAACATTAACACTACATTTGCCCGAGCAGGGCTGCACTAAGATCCCATATGAAATCATTCAGGTAAAAAGGAACCATAGCAAAATAACGACACCAAGGCAATCGAGTGTCGTCGGTCACAGTGGCTGTAGCGATTGCCCGTCTCTGTGAAAACCACCAGAGAACAATGCACACCGGGGGGAACTCACAAGAGCCACGCACTACAATGTCCGACACACAAACCTAAccctctgaaaaacaaacacaaaacaacttctgttctttaaaaatcTTTGACATTTctaccattttcttttcttcaacagaattaaattaaatgatataAAAATAGCTGGCCTTGCGAGCTCCTCCCCCCCAGTCAGTGTGCACTTCAAGGCAAGAACAAAGATTAATTATCAGCTGTTTTTAATGgcattgtctgtctgtctgtctgtctgtgcgttTTGGTTTGACACCAGCAGGAGCCGAGAGAAGCACTGGAGCCAGAGAGCAGggcccggcccggcccagcAGCACAAGAAAGCTACCAGCAGTGATGCTTATGGGAAGGAGCGAGTGCATCCGGACCGAACCACCGCAGCTGCTCCCGAGTCTCTGCGGGTTCTGTGCGTAGGCGGCTCAATGTTTGGATTCAATCTGAGCAACTCTGCAAGCGGGGAGGGGAGGGGCCTGTCACACGGGTCTCAGAGACGGAAGAACAGaaactgtttaataaaatacaccgTTACAAACAGAAAGAAGAGCAAACAGTCAGTTAATGACTATTGCACGGGGGGTCGCAGCTATGGAGATGTGAAACAACCAGGATGCTTCCACAGACTCCAAAACAGGACGTGAAGGGCAGACAGGGCACTAGGGGGAGGAGACAGAGGACAGGGGACAGACAGGGCACTAGAGGGAGGAGACAGAcaggggacagggacagggttGGTGGGGTCAGAAAGGCACAGCCACACAGCTTGTACCCCTGGGGCCTCAGCCTGGGGTCCCTGTGTTGAGTATGTGGTCTGAGCCACATGATTGGTCGACTGGTTTGTGGTTGGTCTCGGTTGTGGCAGCTGAGGCTGGGGCCGCACAACTCCTGCTGCTTAAAGGCCTTAGGTGTGGATCGTACCCCCCCCAACTCTCAGCTGCTCAACTCAATTCAATAATTAGTTCATCTTATTAATCTACGTATATGGCAACACAGGCATGGACTGACACCCCTGCTTGGACCTGAGAGGTGAAAGGTCAAgctcaaccccccccccctccacagcGCTCTGGGCGACACACAGCAGAGCAACTCAACAGCTAGAAGACACCTTTACAGTTCAAGTCTGAagattaaaacactttttgtcCTTAAACTCGtccatttcacttttttatctCAGAACAATTAGGAATATTTCCAACTCGCCTACTTACTCTATCTGTCTATATCTACCCATCTAACCTCATTGCTCTTCATTTTGAATGgctattttttcaaatataaatatatttagaatgtataatttattattaatctttttgttccttttgtttaaactgtttaaaatgtgcgCTGGTGCAGCGAGTGTCGGGAAGCAGTGTGGGGGAACAGACGGCGGCGAGGAAGGACATTAAGGACATATAAGGTCAGAGAGGATTCggcacagaaacaaaataataacaatcaaaaGACACAcgtcaaattattaaaaaagatttaaaaaaacccCATTGTAAACGGGGCATCGATTCGCCAGATACCACGCTAAAATAAATCGTCCAGAATGTCTGTGGTCTAGATGCCTACTATGACATCACAGAGAGCCTAAGAGGGTGGGTGGGACAGAGGGCTGGAGTCAGACAACCAgcctgacagacacacacacacacacacacacacacacacacactcacacagacagacagccagacagacacacacagccggacaaacagacacacacagagacagacatggACACAGCAGTAATAAGCACTACACCAACCCCACACAGCGCAACAACTATTTAAGCAAAATACCTGTTATTGTGTAATTAGTAAAGGTTGCCGTTGCACACCGTGGCGCCCTCATCCAGAAGCACAGCTCAAGTGATCTGTGCAATATGAATAACAATCATGACAATCACAGTAATAATAGTCAGAGTCTGCTCTGCAGGGGGTCAGCGGTCCAGACCTCTGTCCCACAGTCTCTCAGTGTGGAATGTGTGTTGAGCTTTGAAAGTGCAAAGACATTAAACgagaataatcataataatacaagaaaaatcGAACTGGATCAGAACCTCCACTAACAGATTGCTTGGCaccatttcaagttatttcacaAACAGCCTACATTTCTGATTGtctttcaaattatataattttgcttttgttttaaagtggaTTAACAAATAAACGATAGAAGATAAAGTGTTTAGCGGGGGGGCTGAAGCGGCTGCAGAGTCCGAGGGGGCCGGTGGGGGGGGTGAGAAGtgaaacaaagtacaaaaatgaaatgaaatgaaaaactaaaaatgaaatgaaaatgtaaaatctctCGCTCGTTTGTTGTCGGAGTATTTCCCCCTCGAGGTCTTCCGAGCCCCCTCCGCCTGGGACCCCCCCACTCCGTAGACATGGTGGTCGTCTGGACTTTACTGCCATTGTCCGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60094 lncRNA upstream 8812 48685967 ~ 48746141 (+) False G48134
TU60091 lncRNA upstream 8812 48732125 ~ 48746141 (+) True G48134
TU60078 lncRNA upstream 134615 48579971 ~ 48620338 (+) True G48121
TU60048 lncRNA upstream 240043 48514692 ~ 48514910 (+) True G48093
TU60046 lncRNA upstream 248755 48505871 ~ 48506198 (+) True G48091
TU60123 lncRNA downstream 31275 48791987 ~ 48795514 (+) False G48155
TU60124 lncRNA downstream 31275 48791987 ~ 48795514 (+) True G48155
TU60126 lncRNA downstream 31275 48791987 ~ 48795514 (+) False G48155
TU60139 lncRNA downstream 61989 48822701 ~ 48823613 (+) True G48167
TU60140 lncRNA downstream 66342 48827054 ~ 48828975 (+) True AMCG00013985
AMCG00013978 mRNA upstream 28695 48715370 ~ 48726258 (+) True AMCG00013978
AMCG00013975 mRNA upstream 138801 48611642 ~ 48616152 (+) True AMCG00013975
AMCG00013977 mRNA upstream 156917 48595603 ~ 48598036 (+) True AMCG00013977
AMCG00013968 mRNA upstream 182024 48547254 ~ 48572929 (+) True AMCG00013968
AMCG00013971 mRNA upstream 208753 48533886 ~ 48546200 (+) True AMCG00013971
AMCG00013989 mRNA downstream 27761 48788473 ~ 48790311 (+) True AMCG00013989
AMCG00013983 mRNA downstream 54054 48814766 ~ 48816208 (+) True AMCG00013983
AMCG00013985 mRNA downstream 60644 48821356 ~ 48827425 (+) False AMCG00013985
AMCG00013984 mRNA downstream 72633 48833345 ~ 48838141 (+) True AMCG00013984
AMCG00013982 mRNA downstream 78819 48839531 ~ 48843626 (+) True AMCG00013982
TU60059 other upstream 209825 48541942 ~ 48545128 (+) False AMCG00013971
TU59942 other upstream 403668 48281063 ~ 48351285 (+) True G48026
TU59933 other upstream 485681 48268754 ~ 48269272 (+) True G48018
TU59923 other upstream 499132 48254294 ~ 48255821 (+) False AMCG00013961
TU59915 other upstream 505240 48248067 ~ 48249713 (+) False AMCG00013961
TU60116 other downstream 15785 48776497 ~ 48778459 (+) True G48150
TU60138 other downstream 60538 48821250 ~ 48826055 (+) False AMCG00013985
TU60248 other downstream 253917 49014629 ~ 49067016 (+) False G48235
TU60243 other downstream 316030 49076742 ~ 49100458 (+) True G48231
TU60357 other downstream 584516 49345228 ~ 49347221 (+) False AMCG00013996

Expression Profile