RNA id: TU60357


Basic Information

Item Value
RNA id TU60357
length 1003
RNA type TUCP
GC content 0.56
exon number 5
gene id AMCG00013996
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49345097 ~ 49348601 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAACATCACAACAACCAGCCGTGCGCGCTTCTAATGGCGGCGTGCGACTGTGCTTAAAGTCGCCCGTTTTATGGGAATGTGGGAAAGATATATGAACAACCATAGCATACTCTACTGGGAATTAACTGAATACTATACGGAATAGTTCCACATTAAATTGCTATTTCGTTGTAGGGAAGTAATGTAAGTGATTAGTATTGTTGTCGCTACGACATACCTTTGTTTCTATACGGTGCGAGCGTTGTATATTTTTTTCGCACGGCGTCAGgctacaaaaaatacataaataggtaTTTCCTCATCAGAGTGTAGTGTGAAAGCTGTACTGTTGGCGTGCAGCGGTGCCCTTGCAATAAGTTCCGAGCGGAAGCACGGCCTGCCTGCTCGGGGTTCCGGGATATAAAGCCACGCATGCGCGGAGGTCAGCGGCTCACAATGCAGTCTGCAGAGGAGGACTGCGGCCCGGTGAAGGACTGGCCTGGTGGGTTCCAGCTGCTCTACTTGAGTGGTGACCTCTTCTCCTGTCCGTCGGACGAGAGCCTGGCGCACTGCATCAGCCAGGACTGCCGCATGGGCGCAGGCATCGCCGTGATCTTCAGGAAGACGTTCGGGGGCGTGGAGGACCTGCAGAAGCAGGGGAAGAAGCCGGGGGAGTGTGCGGTGCTGCAGAGAGACCAGCGCTTTGTGTACTACCTGATCACCAAGGAGAAAGCGAGTCAGAAGCCGACCTACGACAGCGTGCGTCAGAGCCTGGAGGCCATGCGGGGGCACTGCCTGGAGCACGGGGTGCAACACCTCTCCATGCCCCGTATCGGCTGTGGTCTGGATCGCCTCCAGTGGAGCAAAGTGTCCCAAATGATTGAAGATGTGTTCTGCGAGACTGACATCCGCATCACTGTCTACACGCTGCCCCTGCAGACTGGTGCACAGCTGGGCTCTGGGGGGGGCAGAGGGGTGCCAGAGCAAGGGCAAGGCAGGCGCAGGAGCAGGGGCAGCAAGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60257 lncRNA upstream 233145 49068105 ~ 49112083 (+) True G48243
TU60247 lncRNA upstream 249682 49090314 ~ 49095546 (+) True G48235
TU60250 lncRNA upstream 294930 49027168 ~ 49050298 (+) True G48236
TU60146 lncRNA upstream 490865 48853986 ~ 48854363 (+) True G48173
TU60144 lncRNA upstream 494217 48846064 ~ 48851011 (+) True G48171
TU60383 lncRNA downstream 105812 49453033 ~ 49453872 (+) True G48353
TU60389 lncRNA downstream 106763 49453984 ~ 49456698 (+) True G48354
TU60422 lncRNA downstream 137268 49484489 ~ 49484959 (+) True G48372
TU60526 lncRNA downstream 332276 49679497 ~ 49679876 (+) True G48449
TU60545 lncRNA downstream 382450 49729671 ~ 49731800 (+) True G48460
AMCG00013993 mRNA upstream 388363 48939062 ~ 48956865 (+) True AMCG00013993
AMCG00013992 mRNA upstream 432160 48908137 ~ 48913068 (+) True AMCG00013992
AMCG00013995 mRNA upstream 441198 48896802 ~ 48904030 (+) True AMCG00013995
AMCG00013988 mRNA upstream 457059 48886754 ~ 48888169 (+) True AMCG00013988
AMCG00013982 mRNA upstream 501602 48839531 ~ 48843626 (+) True AMCG00013982
AMCG00014005 mRNA downstream 66734 49413955 ~ 49419897 (+) True AMCG00014005
AMCG00014004 mRNA downstream 94163 49441384 ~ 49448751 (+) True AMCG00014004
AMCG00014010 mRNA downstream 193209 49540430 ~ 49544710 (+) False AMCG00014010
AMCG00014009 mRNA downstream 204938 49552159 ~ 49556841 (+) True AMCG00014009
AMCG00014022 mRNA downstream 217743 49564964 ~ 49569099 (+) True AMCG00014022
TU60243 other upstream 244770 49076742 ~ 49100458 (+) True G48231
TU60248 other upstream 278212 49014629 ~ 49067016 (+) False G48235
TU60138 other upstream 519173 48821250 ~ 48826055 (+) False AMCG00013985
TU60116 other upstream 566769 48776497 ~ 48778459 (+) True G48150
TU60104 other upstream 584516 48754953 ~ 48760712 (+) False G48142
TU60435 other downstream 190833 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other downstream 190833 49538054 ~ 49545335 (+) False AMCG00014010
TU60437 other downstream 190833 49538054 ~ 49545335 (+) True AMCG00014010
TU60438 other downstream 190833 49538054 ~ 49545335 (+) False AMCG00014010
TU60500 other downstream 266480 49613701 ~ 49617240 (+) True AMCG00014021

Expression Profile