G48353


Basic Information

Item Value
gene id G48353
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49453033 ~ 49453872 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60383
TTCTGTGTgggaaattgtttatttaccattttaattatttcaagataacaacagcaacagtaCATCTATCACTGGCAGGACAATATAAACGAGTTAAAACAGACTGGTTTAATGAGCTCTCGAATTGTCGCTCGTTTCTCTCCTCACAGATGTATCACACAAACACTCAATGTGGTTTTTCTGGTCAtgttaacaatttaaaaagattcGATTTAAGttttagtagtttttttttttttttgtcgtgtttttttgttaattttttacTTCAAATGAGGATAAAAGAAACCATAAGATcgctaaataaaatattaacaccTGCAGAGCACAACAGTCACTTTAAttcatgtacatatttaaaaaaggaaaacattaaaaaggaaaacaaactcaaGCGCAGTCCAGAGAGAGGCTGTGCCCGGCAAAGTGGGGTGCAGCCCAGAACATGCTGGGGGGGGCATTTCATCATGAGCTCTACCTGTTCCACCAAGACCTTTGACCTTTAACCTTTGACTTCTGACCtcgaggggaggggaggggaggggggaagcGTCACAGGTAGAGCATCTCAATCATCGGCCACTAACCCACATGACTTCTGCAGACAACGCAGACCATCTGGGACGGACCAAACTAATCGACACACAAACGTACAGAGGATTGACAAGATGGAGAGGTCGTCCAGGGGTCGGGCCCGAGAGGCGATGCCCTGAGGGGACACCCTGAGGGGACACCTGACTCTGGCATCGATTCTCTTCCTGGTCCTTTAGGGCTGCAGTCGTCAAGGCCCCGCCCCTCACCAGCTTCTCCCAATCAGCTAGTGAGGGATGCAAGAAACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60383 True 840 lncRNA 0.45 1 49453033 49453872

Neighbor

gene id symbol gene type direction distance location
AMCG00014004 NA coding upstream 4282 49441384 ~ 49448751 (+)
AMCG00014005 LOC108246070,LOC106532244,LOC100709513 coding upstream 33136 49413955 ~ 49419897 (+)
AMCG00013993 NA coding upstream 496168 48939062 ~ 48956865 (+)
AMCG00013992 gnai1,LOC105897337,LOC108442115,LOC108265813,LOC100706147,LOC107590838,LOC108279833 coding upstream 539965 48908137 ~ 48913068 (+)
AMCG00013995 NA coding upstream 549003 48896802 ~ 48904030 (+)
AMCG00014009 NA coding downstream 98287 49552159 ~ 49556841 (+)
AMCG00014022 NA coding downstream 111092 49564964 ~ 49569099 (+)
AMCG00014015 NA coding downstream 116329 49570201 ~ 49586822 (+)
AMCG00014013 NA coding downstream 134305 49588177 ~ 49594866 (+)
AMCG00014016 NA coding downstream 156485 49610357 ~ 49613183 (+)
G48243 NA non-coding upstream 340950 49068105 ~ 49112083 (+)
G48236 NA non-coding upstream 402735 49027168 ~ 49050298 (+)
G48173 NA non-coding upstream 598670 48853986 ~ 48854363 (+)
G48171 NA non-coding upstream 602022 48846064 ~ 48851011 (+)
G48167 NA non-coding upstream 629420 48822701 ~ 48823613 (+)
G48354 NA non-coding downstream 112 49453984 ~ 49456698 (+)
G48372 NA non-coding downstream 30617 49484489 ~ 49484959 (+)
G48449 NA non-coding downstream 225625 49679497 ~ 49679876 (+)
G48460 NA non-coding downstream 275799 49729671 ~ 49731800 (+)
G48467 NA non-coding downstream 299712 49753584 ~ 49754027 (+)
AMCG00013996 NA other upstream 104432 49345097 ~ 49348601 (+)
G48231 NA other upstream 352575 49076742 ~ 49100458 (+)
G48235 LOC105889183 other upstream 357487 49014629 ~ 49095546 (+)
AMCG00013985 NA other upstream 624058 48821250 ~ 48828975 (+)
G48150 NA other upstream 674574 48776497 ~ 48778459 (+)
AMCG00014010 srsf3,LOC103385776,LOC105933254,LOC105017130 other downstream 84182 49538054 ~ 49545335 (+)
AMCG00014021 NA other downstream 159829 49613701 ~ 49620027 (+)
G48451 NA other downstream 235800 49689672 ~ 49692361 (+)
G48453 NA other downstream 244748 49698620 ~ 49699622 (+)
G48454 NA other downstream 247379 49701251 ~ 49701943 (+)

Expression


Co-expression Network