AMCG00013993


Basic Information

Item Value
gene id AMCG00013993
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48939062 ~ 48956865 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013993
gggaggggaggggagggagacgGGCTCCCCCCGGGGCTCCGCGCCGAGTGGTACAGCCCGCCTGGGTGTCAGAGGTATTTAAATGCAGAGCCGTCAGCCACTGCTGCCAGAGCACACAGCTGGCCTGAACCaggaagaggagaggggggagagCAGCTGAGCTCCTGccgtctgcgtgtgtgtgtgtgcgtctgcgCCTGTGTTTCACTCCTGTCCTGCACATCTGTCGGGCTGCATCGCCGAGGCAGGGCCGACCAGCAGCCGGTGAGGGGGGCATGCTCCAGCGCACACAGGGAGCTGGGCTCTGGGCTGACGCCGTGTCACACAGCCCACCGGACACAGAGAGacCTGCGGGGTGTCGCTGGCTCATACCCCCTGACCTCCCAGCGCTCCCTGCCTGGGACGCCCATCTCCTTGAAGCACTTCCCCATCGACCTGCGCACCTCCATGGACGGGAAGTACAAGGAGATCGCCGAGgAGCTGTTCTCACGCAGCCTGGTGGACAGTGAGATGCGCAGTGCTCCCTATGAGTTCCCAGAGGACAGTCCCATCGAGCAGCTGGAGGAGCGGCGCCACCGGCTGGAGAGACAGATCAGCCAGGACATCAAACTTGAGCCCGAGATTCTGCTCAGAGCCAAGCAGGACTTCATGAAAATCGACAGCGCTGCTGATCTGGAgTACATGAATGAGCAGAACGAGGTAGCCCTGGACCACGGCCCCAAAGAGCGGGAGCCGCTGCTGGAGAGAGAGTACCAGCGCGTCACCATCTCCGGGGAGGAGAAGTGCGGGGTGCCGTTCACAGACCTGCTGGACGCGGCCAAGTGTGTGGTGAAGGCCCTGTTCATCCGCGAGAAGTACATTGCCCTGTCCATGCAGAGCTTCTGTAAGACCACGGCGCGGTACCTGCAGGAGCTGGGCGAGAAGCCGCTGGAGCTGCGCGTGTATGATGAGATCCCCGAGACGCCGGTGGCCGCGGACGCCCCGGTGCACCCCCCCGTGTCTGACACGCACCCCTACGAGAACCTGGATCCCAAATGCATGCCCCCAGACATGGGCTTCGGCTGCCAGATGGTGGACGGAGTGATCCATGTGTACACCAAGGCCAGCCAGATGGAAAAGACCACCGAGCTGGACCTGCCATACCCAGACCTGCAGGAGTACATTGCAGACATGAACGTGCTCATGGCTCTCATCATCAACGGCCCTGTAAAGTCGTTCTGTTACCGCCGGCTGCAGTACCTGAGCTCCAAGTTCCAGATGCACATCCTGCTGAACGAGATGAAGGAGCTGGCGGCGCAGAAGAAGGTGCCGCACCGCGACTTCTACAACATCCGCAAGGTGGACACGCACATCCACGCCTCGTCCTGCATGAACCAGAAGCACCTGCTGCGCTTCATCAAGCGGGCGATGAAGAAGTACCCGGGGGAGATTGTGCACGTGGAGCAGGGCAAGGGCCAGACGCTGATGGAGGTGTTCGAGTCCATGAACCTCACGGCCTTCGACCTCAGCGTGGACACCCTGGACATGCACGCGGACCGCAACACATTCCACCGTTTCGACAAGTTCAACTCCAAGTACAACCCCATCGGGGAGTCCATTCTGCGTGAGATCTTCATCAAGACGGATAACTACATCGAGGGGAAGTACTTCGGGCACATCATCAAGGAGGTGATGGCTGACCTGGAGGAGAGCAAGTACCAGAATGTGGAGCTGCGTCTGTCCATCTATGGCAGGTCACGGGACGAGTGGGACAAGCTGGCGCACGATGTCTACCATACCAAGAAGCAGCTGGCAAACTTCCAGGAGATGCTGGAGAACATCTTCCTGCCGCTGTTCGAGGTCACGATCAATCCCCGCAGCCACCCAGCGCTGCACCTGTTCCTGCAGCATGTGGTGGGGTTTGACAGTGTGGACGATGAGTCCAAACCTGAGCACCACATCTTCAACCTGGACAGCCCCCTGCCGGCCAACTGGACCGAGGAGGACAACCCCCCGTACTCCTACTACCTGTACTACATGTACGCCAACATGACGGTGCTTAACCACCTGCGCAGGAGGCGGGGCTTCCCCATGTTTGTGCTCCGCCCCCACTGTGGGGAGGCGGGGCCGATCCACCACCTGGTGTCAGGTTTCATGCTGTCAGAGAACATCTCCCACGGGCTGCTGCTGAGGAAGgcCCCTGTGCTCCAGTATCTGTACTATCTGGCTCAGATCGGAATCGCCATGTCGCCACTGAGCAACAACAGCCTCTTTCTGAGTTACCACAGAAACCCTTTGCCGGAGTACCTGTCCCGTGGGCTGATGGTGTCACTGTCCACGGACGACCCCCTGCAATTCCACTTCaccaagGAGCCCCTGATGGAGGAGTACAGCATCGCAGCGCAGGTGTGGAAGCTCAGCTCCTGTGACATGTGTGAACTGGCCAGGAACAGTGTGCTGATGAGCGGCTTCTCTCACAAGGGCAATGACATCCGCCGTACCAACGTGCCAGACATCCGCGTGGGGTACCGCTACGAGACCATGTGTGAGGAGCTCAACCTCATCACGCAGGCGGTGCGCAGCGAGGAGCTGGACACCATCGAGGAGGAGGACAGCCTGTCCATGCCCCCGCTGCCCGGGAGGCGA

Function

GO: NA

KEGG:

id description
K01490 AMPD; AMP deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013993 True 2625 mRNA 0.61 18 48939062 48956865

Neighbor

gene id symbol gene type direction distance location
AMCG00013992 gnai1,LOC105897337,LOC108442115,LOC108265813,LOC100706147,LOC107590838,LOC108279833 coding upstream 25994 48908137 ~ 48913068 (+)
AMCG00013995 NA coding upstream 35032 48896802 ~ 48904030 (+)
AMCG00013988 NA coding upstream 50893 48886754 ~ 48888169 (+)
AMCG00013982 NA coding upstream 95436 48839531 ~ 48843626 (+)
AMCG00013984 NA coding upstream 100921 48833345 ~ 48838141 (+)
AMCG00014005 LOC108246070,LOC106532244,LOC100709513 coding downstream 457090 49413955 ~ 49419897 (+)
AMCG00014004 NA coding downstream 484519 49441384 ~ 49448751 (+)
AMCG00014009 NA coding downstream 595294 49552159 ~ 49556841 (+)
AMCG00014022 NA coding downstream 608099 49564964 ~ 49569099 (+)
AMCG00014015 NA coding downstream 613336 49570201 ~ 49586822 (+)
G48173 NA non-coding upstream 84699 48853986 ~ 48854363 (+)
G48171 NA non-coding upstream 88051 48846064 ~ 48851011 (+)
G48167 NA non-coding upstream 115449 48822701 ~ 48823613 (+)
G48155 NA non-coding upstream 143548 48791987 ~ 48795514 (+)
G48134 strip1 non-coding upstream 192921 48685967 ~ 48746141 (+)
G48236 NA non-coding downstream 70303 49027168 ~ 49050298 (+)
G48243 NA non-coding downstream 111240 49068105 ~ 49112083 (+)
G48353 NA non-coding downstream 496168 49453033 ~ 49453872 (+)
G48354 NA non-coding downstream 497119 49453984 ~ 49456698 (+)
G48372 NA non-coding downstream 527624 49484489 ~ 49484959 (+)
AMCG00013985 NA other upstream 110087 48821250 ~ 48828975 (+)
G48150 NA other upstream 160603 48776497 ~ 48778459 (+)
G48142 NA other upstream 178350 48754953 ~ 48760712 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other upstream 392862 48533886 ~ 48546200 (+)
G48026 NA other upstream 587777 48281063 ~ 48351285 (+)
G48235 LOC105889183 other downstream 57764 49014629 ~ 49095546 (+)
G48231 NA other downstream 119877 49076742 ~ 49100458 (+)
AMCG00013996 NA other downstream 388232 49345097 ~ 49348601 (+)
AMCG00014010 srsf3,LOC103385776,LOC105933254,LOC105017130 other downstream 581189 49538054 ~ 49545335 (+)
AMCG00014021 NA other downstream 656836 49613701 ~ 49620027 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020688 ampd2a coding NC_007133.7 CM002906.2 1205787 ~ 1245226 (-)