AMCG00014005 (LOC108246070,LOC106532244,LOC100709513)


Basic Information

Item Value
gene id AMCG00014005
gene name LOC108246070,LOC106532244,LOC100709513
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49413955 ~ 49419897 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014005
ACTGGACTGGACAGGTGTGTGGCTAACCtcagaaaacagacagacaaacagagagagagtgagagtgagagagagagaggagttttGGGGAGTATCTATACAAAACACCTGCCAAACTATCGCCTGACTGGATTATTTAACTCTTCCTTCATTGTCTGGCTTGGCTTTTTGACTACATTTGAATTTCCTTTGCTCTGATTGGACTGTTTCAACAGAAGGCGGACCCGATGTCTACGTACGAGCTCAGCAGCATCCTGACCAACGTGAACAACACGGTGTACCAGACAGCGGACCCGCCGGCGGGCTGCATGGCGCTCCCCGACTCCAAGGAGGCGCTGCAGCCGCTCACACACGACTCGCTGCCCGCAGAGCTCCTGGGCCCCTGCAAGTGGTACAACACCCACCCCCAGTTCTGGAGCCGGCAGAACGTGCTGGAGTGGATTTCCTACCATGTGGAGGAAACCAAGTTTGATGCCAGCACCCTGAATGTGGCCTACTGCGCCATGGAGGGGCCGGTGCTCTGCCAGCTGTCCCGGAACACCATGGGCTCCATTGACATGCTCAACAGCCTCTTTGCCGACGTCACAGAGCTGCTGGCTGAGGACACCTACAGCATCCTGGATACCGTGGTCCTGGCACCAGgagTCTGGGACACACAGGACGGGCTGAAGGTTGAGGCTCCAGCTTGGATCGACCCTGGGTACGAATCTGGACCCACCTCCCCCGACAGCCTGGACAGCTCCAACGCAGggATGCTGAGCTACCCCACCCCCAGCTCCCCAGACTCCGATGGAAGTGACTCCGATCTCGAGTTCTCGGATCTGAGATTCCGAGCCAGCTCCGATGGGTTCATGAAGACGGAGAGGGGCGATATGAAGCCCTGCAAGAGAGGCCGTGGGAGGCCCAGGAAGCTGAGCCAAGGCATGGAGCACTGCATGGAGTccaagaaaagcaaacatgCCCCCCGCGGGACTCACCTCTGGGAGTTCATCCGGGACATCCTGATCCACCCGGAGCTTAACCACGGGCTGATGAAGTGGGAGGACCGGCGCGAAGGCGTCTTCAAGTTCCTCAAGTCGGAGGCGGTGGCGCAACTCTGGGgccagaagaagaagaacagcaGCATGACCTACGAGAAGCTGAGCCGTGCCATGAGGTACTACTACAAGAGGGAGATCCTGGAGCGAGTGGATGGCCGGCGGCTGGTGTATAAGTTTGGGAAGAACTCCAGCGGGTGGAGGCTGGAGGAAGCGGGTGCGGGGATGTGAGCATCCCGGAGGAGCGGAAGTCCCCCTCCTTTTCTCCCTGGGACTTTGTGACCTCTGGGCAGGATACCTGTTCCACTCAGGAGAGACAAACTTGAAGGACAGACGTTCGAGAAGCCTGGCCAGTCTGAACGGCCACAGTGTGTACGGGCCTCCCCGAGAGGCACCGCCAGAAAACGTAAGCCAACATTTTGGCTAAAGTAGGTTATATGAACCGATACTGATATTGTGTCTTGTTTGATCGcgctttattgttttgtttgatatttgttagtttttttactcCTTGgtccttttatttaattttgtttctgaagCTCGAGTCTTTTCAGAAGAAAGATCCCGGCCCTCAATTTCAGGTCCGGCGGTCACAggattgaaaagaaacaaatttaCAAACGAGCGAGAAATGAACTTCCCCGATCCCCAAAGATTTGAACACACCCAGAGATCCCGCCCGGctccacagcacacagcacgGAGGACGGAGATCCATCATGCTCTGCCAATCCCTGTTTATACGTTAGGAGTGCCTCGTCCCGGCAAGGTTCCCCTGGCTGCCCGGAGCTGCTGAGTGAAGCAGCACTTTAGCCGTGGCCAGATGAAGTAGTGTAACGGTGCAGGCGatccgtgtgtgtgtttgtacagaaCTGTGTATCGTGTACAGTGtaatttaaatcatatctgtttttaataattaaggGTCTGTCAGCTGGACTGATGTTCCcgtcttgttttttcttctcttgttgtgtaaaataaataaaccttcaatttttttcatttaagatgATGTAAGTCCATATATAAAGACCTGTGACACTTTTTTGTATCATGCAATgctgttttttcaaataaatatatatatttaaaaaaga

Function

NR:

description
PREDICTED: ETS-related transcription factor Elf-3-like

GO: NA

KEGG:

id description
K09429 K09429, ELF3; E74-like factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014005 True 2143 mRNA 0.53 9 49413955 49419897

Neighbor

gene id symbol gene type direction distance location
AMCG00013993 NA coding upstream 457090 48939062 ~ 48956865 (+)
AMCG00013992 gnai1,LOC105897337,LOC108442115,LOC108265813,LOC100706147,LOC107590838,LOC108279833 coding upstream 500887 48908137 ~ 48913068 (+)
AMCG00013995 NA coding upstream 509925 48896802 ~ 48904030 (+)
AMCG00013988 NA coding upstream 525786 48886754 ~ 48888169 (+)
AMCG00013982 NA coding upstream 570329 48839531 ~ 48843626 (+)
AMCG00014004 NA coding downstream 21487 49441384 ~ 49448751 (+)
AMCG00014009 NA coding downstream 132262 49552159 ~ 49556841 (+)
AMCG00014022 NA coding downstream 145067 49564964 ~ 49569099 (+)
AMCG00014015 NA coding downstream 150304 49570201 ~ 49586822 (+)
AMCG00014013 NA coding downstream 168280 49588177 ~ 49594866 (+)
G48243 NA non-coding upstream 301872 49068105 ~ 49112083 (+)
G48236 NA non-coding upstream 363657 49027168 ~ 49050298 (+)
G48173 NA non-coding upstream 559592 48853986 ~ 48854363 (+)
G48171 NA non-coding upstream 562944 48846064 ~ 48851011 (+)
G48167 NA non-coding upstream 590342 48822701 ~ 48823613 (+)
G48353 NA non-coding downstream 33136 49453033 ~ 49453872 (+)
G48354 NA non-coding downstream 34087 49453984 ~ 49456698 (+)
G48372 NA non-coding downstream 64592 49484489 ~ 49484959 (+)
G48449 NA non-coding downstream 259600 49679497 ~ 49679876 (+)
G48460 NA non-coding downstream 309774 49729671 ~ 49731800 (+)
AMCG00013996 NA other upstream 65354 49345097 ~ 49348601 (+)
G48231 NA other upstream 313497 49076742 ~ 49100458 (+)
G48235 LOC105889183 other upstream 318409 49014629 ~ 49095546 (+)
AMCG00013985 NA other upstream 584980 48821250 ~ 48828975 (+)
G48150 NA other upstream 635496 48776497 ~ 48778459 (+)
AMCG00014010 srsf3,LOC103385776,LOC105933254,LOC105017130 other downstream 118157 49538054 ~ 49545335 (+)
AMCG00014021 NA other downstream 193804 49613701 ~ 49620027 (+)
G48451 NA other downstream 269775 49689672 ~ 49692361 (+)
G48453 NA other downstream 278723 49698620 ~ 49699622 (+)
G48454 NA other downstream 281354 49701251 ~ 49701943 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location