RNA id: TU60144


Basic Information

Item Value
RNA id TU60144
length 4948
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G48171
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48846064 ~ 48851011 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGAAAACAttcttctctcttttatttttgtaaatatcttTTCCCCTCCTATATAATGTCTATAACCTCTGTCGATCGGGGAATGGAGGCCTGTACACGTTCGCACAGACAGCCCGAGCCCTCCTGCTTGATCAGTACCATGCGTGACATTATTACAGCGGGCCTCTGTGGTTCTGGATGTTGTTGTTTCGGAGACCGGTGCACAGCTGGGCGGTGGCATCAGGTCGGGGTGACTCTCTGCCCAGTGCTGCCGTGGTCAACAGACAGCTGCTTCTCAGAGCCCTGTGAGGGCAGGGCGGGCCTGCAGACACAGCCTCTGCACAGTACAGTGAGAACAAGACAGTGTCTCTTCCCCCACTGGTGTCTGAGTGCTACACAACAGGATGTAGCAGGACAGATATACAGACAGCTTCAACGTGGACTGTGTTACTTCTCATACAGTGGCACTGCCAaattgcattgaaaataaatacatacatacatacataaagctTTACAgagatagaaaaaataaataaaacctgaatgTTAAACCTCGCGCCACAGCTGGCTGGGTTGTACAACATACTGTATTTTGATGCGGATTTTGGTGAATTTGGGTTGGATGCGCAAGCTGTCTGCAGGGTGTGAGCTTGTAGGACTGGCTGCCTGGCTCCTGCACGTGAGACTGGGTGTGGGTTCCCTCACAGCGTGCGTGAGATCGGTCTGCGTCCGGACCCAGAGCCGCAGCTTTGCGTTACTGCGCTGCACTGCCGCTCACCTGGCCAGGGAGACCTGCCTTTGCTGTCCCCTCTGCTGCGCAGCCGCTGACACAGAGACTGGCGCTTTTGTCACTGTCCCactgtgcattgtgtttttttagttgtattttttgcatGGTTGTGTTAttgcaagaaatatatatatttaatattttctagcCCATTTGAAATAAGCAAGCAAATTACCATAGACGTCTCAGTGCAACAAAAAGCTCTCAACCAACATCTGTTTCCCTCTGGTCCTGAGCCTGCACTCTGGCACCCTGTGGCACAGCGCCCGAACCAGTTGAGCCCACAGACTGGCACCCAGTGGCACAGCACCTGATCCAGTTTAGCCAGCACTCTGGCACGCTGTGGCACAGCGTGTGAACCACACACCGTCTCGGGCAGAGCAGCCAGGAAGCAGGTTCTGGCCGCTCTGATCCGATTGCTGTTCCTCGGCTGCGGTGCAATAGATATCTGCAGGGTTTGAAACCGGCAGCTGTTACACACAGGTGACTACAGCCGTGTCATGCATTATcaacttccttttttttttatgtatttattcacttgtgtaacttttagtttttgttattaCGGTCGTCATGTGGTGCTGCTGCAGCTCTGAGAACCAGTCAGTCCATGTTTCTGTTCCCAAGAACCAATCGGAAGCGACTCTAAACATCTCCGGCAGTCCTCTGAAGTCTGGTAACAGAGCGCCGCAGCTcaagacactgtaacactgaccCTGAAGACGCCACTGACGGGACGCTGCCACTGCAGTAAAGACAGACACCGAAACATGCGCTGCTCATGAAACATGAGGTGCATGAGGTGGACGAGAGCCTGGGTCCGCCCTGGAAAACAGCGCTTTGCCCTGGGTGTACAATACAGCACTGCAGTGTGTTtcatacagatatatatttgtgaagCAATCTGtaatttttattacataaacaCGTCACGATCGGGAGACAAAAAAGATGACAGAAGTGTTGTGTTTATTACAGCGAGCCGGATTCTTGGAAGTGCCTTTAGATTATTCAAACACAGCGGTTTCTGGTGCCGATCCAGCACTTCCTGGCCCGAGATCACAGCCCGGCCGCGCCGTGTGTCTGGGCTGCGTGTCTCACCGCGGCAGCGACTGGAAGGGCCTCGTCTCCACTGAGGCGGGCGTGATCTGCACGTCGGCCGGGACCTTCATTATTAGTGTGTGACTTTCAGGAAATGTCTAATTAGCCCTTAATTAAGCTGGCATTAAAACACAGAGCAGCCTAAATTGCACTTCTTTACACGACTACAGCTGCCAAAACTGTGACACAGCGGGCGGCTTGCCCCCCGACCCCGGAACAGACAGGGCCGTGTTTTATTTCGCTCACGCACACTTCCTGTGAACGGCTTGCCGGAGCGCCTGCAGGGCTGGACACGGTGacacaaacacatcaataaacgaacaaacacacacagacgcatcACTGAACAAGAGCTACCCTGACTGCTTTCCTTTGCAAAGTACGAGAGGTTCCaccacaagaaaagaaaaagagaaaaaaataagtgtttattcTCAAACTAAAGTTTAATGTAACTTAAACCAGGCCGAGAGAGAAGCCTTTGGTCCCCTCTTATCTGCGTAAAGATTTTATTGTCTCTCATCTGATAGATTGGCCTTTGAGTAGCAGAACTGCTTTcactaattagaaaaataaataaattctgcaCAACTTGTGCGTGTATCACAGTGAGACAGATGCGCACAGGTTCAGGGCGTCCATTACGTCTGGTGTTCACACACAACAGGGTGAAAGTACAACCACAGCAACGGAAACACTGGAAGTGGCTTCTCCTTCACCGCATTTCACAGATCTGTTCTGTGCCGGCTACTACTGGCCCAGACAGGcatatatatagtttcacaCAAGCCGCATCCCCGGCTGCTTGGGTCTCCCCGTCCCGCCCGTCCTGCAGCTCCGCGGCGTCCGACACTGCCCTGGACAGCTCAGGGTAACTAATCCCCAAGAGGCTTCTGGCATCATCTTGGTCTGTGGATGATTCGTAGCCTGTACTCgcccttcctcctccctgcctttcattcttctttctttGGTATTTCATGTCCACTTCCAAAGGCACCACGAGCGGGCAGGGACAGCAGGCTGGCCGATGGCTCTGCCTGATTTTGATGGTGCTGTGAAGCGAGTGTgctgaaacaaacaagcaaacaaacagaaacaaaagaaagatcTGACTGAAGCCCGACAGCCAGGCGAGCCTGAGCGGTGTCGGCGGCCGGAGTGCGGAGAGCCTCTGCGCCTCGTGACTGTTCTATGTCAGCACTTACATTTCCGAAACAAAGCCGTCAGGGCTGCTTATTCGTTGAAGAGAATTAATTAGCCCGCTGCAATTTGGATGTCTCTCGGTTGTCACGACAGACTATCTCTGTACCGTAAGCCGCTCTTACCTTGACAGTAATGCTCTGTAAGACGTTGGTAAAACTGCTGCGCAGATGTTTCCTTGTTTCATCTTTTCTTTTGAGATTTCCGAGCTGCCTAGGCCGGTCATACTTGCTGGCATTATTTAGTTAATCCCTCATGCCAAAGGGAAAGCTGGGGCTGTCCGCGGGAATGAATGCTGTTCCCTGTCAGAGTTTGCACAGACGGTGACTTATTGTGCTGCACATCAATGAAGCGGCAACCTCCGAGCAGAAGGCTCTGTTTTTACACGCCGTCCGTCAGCGCTGGGCAGGACTCTCTGAGACAGGCTGTGCATGTTCACCAGACTGATAAAAGGACCAAGGACAGCTTGGGCCAGTCATGGTGGGCGCTGGGGAAGAGAGATGCACGCCTTTTATACCGCCATGCTGCACACATGACCTGGTCTtggcttctgtttttttctttgtttaggttttacaaaacaaagtgtaagTCCTTGTATATTTACAGTGTTCAGTCCTGACACGGTAAACAACAGCACACGAAGGAGCCCggtttctgcttttgtttgtttgcttgcttgcttgtttggttttgttttctcagatCTGTGTTCAGCTGCCCTCGGTCTGTGCGATGAATCGACACTGATGTGCACAgctagtgtatatatatacatttatatatatttcatggcTTCTTGTATATACAACAACAAACTGAACAACAAAACGAACAGTAAACCAGCTAACCTGAGCTCTGAAATCCAGCCTCTTATTGTTACGACTACAGACGGCAACTGAAGGGAGGGTGACCGTGGGGGATATTTCACAGTACAACCAGCTAACGTCGGTTTACTAATTGGGatcttctctcgctctctctctcatctttcCTAGTTCATCTTGATGCTCTCGCTGTTTGACATTCTCCCTTCTCTGCTCAGCGTAATGCCACTTAATACCAAACGCCTGACATTTCATCAGCatgttttgatgttgttgttttgttgcagttttCCTGCCTGTAGGTTTTACTAGATCCCTGTATTCTAGCACATAAACCCTCCCCCCGTGTCTGTGCTTCCCCAGCATCCTGCCTTAGACATTCAGCATGTACATCACTGTGCAAATAATACTGCTGTTCCCCGCTACACTTGCCCACCCTGTCTGGCATGACGGGGCTATTTTACATTCAGCATGGCAGGTCTACTCTTGGACTAAAGTGCCGAGCTTCGTCTTCTTCGGTTTCTTCTTGCATtgactgtgtttttctttttgtcttttcttcattttaatgtgacatGCTAACCCTGCCGTGTGAACTCCGTGTCTGCTGTGTTTGCTGGCGGGCGCAGTTGACATCCTCTGCAGGTAGAGGAGCTGTTAGTTGGTGGCAGGCCGTGACTGTGACAGTGGCTACTCATAGCATCGTGCTCCGGTCTGTCGGCAGCAGGGTGTTATCGTTCTGTCTTTCTGTCGGAAAGGGACCACTCGGATGTTTCTGTTCAGTTACAAAATCGGTGCTACAAGGCTCCTGCTCAGATCTTATTTAGCGAGACACAACTTTTATATGCACCTTTCCTATTTGCTTTGAAACTATTATTTTCTCagactattactattattattataatattgttctatttgccttttttttccccttccccaAATTTTGCTTTTCCATGCCTCTCTGTTACCAGACTGTTTCACAGTATAAATATGAAGTGctacaaaaatgaaattgctGGAAAGggttcatttttcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60140 lncRNA upstream 17089 48827054 ~ 48828975 (+) True AMCG00013985
TU60139 lncRNA upstream 22451 48822701 ~ 48823613 (+) True G48167
TU60123 lncRNA upstream 50550 48791987 ~ 48795514 (+) False G48155
TU60124 lncRNA upstream 50550 48791987 ~ 48795514 (+) True G48155
TU60126 lncRNA upstream 50550 48791987 ~ 48795514 (+) False G48155
TU60146 lncRNA downstream 2975 48853986 ~ 48854363 (+) True G48173
TU60250 lncRNA downstream 176157 49027168 ~ 49050298 (+) True G48236
TU60257 lncRNA downstream 217094 49068105 ~ 49112083 (+) True G48243
TU60247 lncRNA downstream 239303 49090314 ~ 49095546 (+) True G48235
TU60383 lncRNA downstream 602022 49453033 ~ 49453872 (+) True G48353
AMCG00013982 mRNA upstream 2438 48839531 ~ 48843626 (+) True AMCG00013982
AMCG00013984 mRNA upstream 7923 48833345 ~ 48838141 (+) True AMCG00013984
AMCG00013985 mRNA upstream 18639 48821356 ~ 48827425 (+) False AMCG00013985
AMCG00013983 mRNA upstream 29856 48814766 ~ 48816208 (+) True AMCG00013983
AMCG00013989 mRNA upstream 55753 48788473 ~ 48790311 (+) True AMCG00013989
AMCG00013988 mRNA downstream 35743 48886754 ~ 48888169 (+) True AMCG00013988
AMCG00013995 mRNA downstream 45791 48896802 ~ 48904030 (+) True AMCG00013995
AMCG00013992 mRNA downstream 57126 48908137 ~ 48913068 (+) True AMCG00013992
AMCG00013993 mRNA downstream 88051 48939062 ~ 48956865 (+) True AMCG00013993
AMCG00013996 mRNA downstream 494086 49345097 ~ 49348601 (+) True AMCG00013996
TU60138 other upstream 20009 48821250 ~ 48826055 (+) False AMCG00013985
TU60116 other upstream 67605 48776497 ~ 48778459 (+) True G48150
TU60104 other upstream 85352 48754953 ~ 48760712 (+) False G48142
TU60105 other upstream 85352 48754953 ~ 48760712 (+) True G48142
TU60059 other upstream 300936 48541942 ~ 48545128 (+) False AMCG00013971
TU60248 other downstream 163618 49014629 ~ 49067016 (+) False G48235
TU60243 other downstream 225731 49076742 ~ 49100458 (+) True G48231
TU60357 other downstream 494217 49345228 ~ 49347221 (+) False AMCG00013996
TU60435 other downstream 687043 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other downstream 687043 49538054 ~ 49545335 (+) False AMCG00014010

Expression Profile