RNA id: AMCG00015659


Basic Information

Item Value
RNA id AMCG00015659
length 987
RNA type mRNA
GC content 0.58
exon number 8
gene id AMCG00015659
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 15170615 ~ 15200791 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCATCCCTACACACAGCTCCTTCAGCCCCCCCTGGAACTCTTCAGTACTGGCCAGCTCGGTCAGCACGGCCCCCAGCTCCCCAGTGTCAAACTCCGTCTCCACCAAACTCAGCAGAATGCAGAGGGTGGCCCACCACACAGATGGGTCGGAGGGTGGTCGAATCTCCGCAGCAGAGATGCTGAGAGGTCAGCCTTGGACTTCAGCTCCAAAATTTGGCGAGACCACCTTCTTTCACATCCGCATCTGTCATGGAGTCTGGATCAGTCTGTACTCCTGCTACCACACTGAGGACGAGCTGCTCATCCTGCCCGATGGGCAGGCTGCCCTCCTCTCTGCCCGTCGCTGTGGCCCTGGCGTCAATTTTTCTGGTATCCCTGGCAGCCTGACCCAGATGGCACCGCACACAGACCCTGCAGggtCGTTCAAGGGGGGCGGCAACTCAGGACACCAGCTCACAGCCGCTTTCTCTCTGTTCGTGACAGCTCCAGGTCCAGCTGCTGCCCAGTCTGCACAGAGGCAGCTGAAGGGCACTGTGGGAGAGTCGGTCACATTCCCAGCCCGAGTGGCAGAGCGGGGGTTCCTGTCATATGGAAACAGTGGCAATATTGCATCAGTGGCGCCAGGGAaaggtgtgagtgtgtttggGGCGCAATTCAGGGGCAGAGTGCACTGGGACAGCAGGACTGGACACTTCCAGATCACAGATCTGAGCACACAGGACTCTGGGGAACCTCAGATGTCCAGTAAGACCCAGGTCAGTCTGCTGTGCTCTTTCCTGTGCTCTGTTGCCAATGGGAGAGAGGTGACCCTGTCCTGgtacagagagggggaggagaagcCCCTGAAACACACCAGCTCCCCTGATCTCAACACCAACCTGACTCTCCCTCTGGAGACAGAAGGACTCTCTCACTCCTACAGCTGTGTGGCCACCAACCCCGTCAGCACTGAGAGAGTCACAGTCAACACTGAGGACTACTGCACT

Function

GO:

id name namespace
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124171 lncRNA downstream 43945 15124635 ~ 15126671 (-) True G99430
TU124145 lncRNA downstream 118086 14995538 ~ 15052530 (-) True G99412
TU124144 lncRNA downstream 173852 14992906 ~ 14996764 (-) True G99411
TU124142 lncRNA downstream 187044 14981291 ~ 14983572 (-) True G99410
TU124122 lncRNA downstream 263291 14905981 ~ 14907325 (-) True G99396
TU124192 lncRNA upstream 49110 15249901 ~ 15252717 (-) False AMCG00015660
TU124193 lncRNA upstream 49110 15249901 ~ 15252717 (-) True AMCG00015660
TU124194 lncRNA upstream 49110 15249901 ~ 15252717 (-) False AMCG00015660
TU124223 lncRNA upstream 113362 15314153 ~ 15314453 (-) True G99476
TU124269 lncRNA upstream 364335 15565126 ~ 15565391 (-) True G99513
AMCG00015655 mRNA downstream 62591 15094120 ~ 15108025 (-) True AMCG00015655
AMCG00015652 mRNA downstream 214786 14949243 ~ 14955830 (-) True AMCG00015652
AMCG00015651 mRNA downstream 227076 14940046 ~ 14943540 (-) True AMCG00015651
AMCG00015649 mRNA downstream 242511 14921312 ~ 14928105 (-) True AMCG00015649
AMCG00015647 mRNA downstream 375191 14780269 ~ 14795425 (-) False AMCG00015647
AMCG00015658 mRNA upstream 35343 15236134 ~ 15244894 (-) True AMCG00015658
AMCG00015660 mRNA upstream 49186 15249977 ~ 15252721 (-) False AMCG00015660
AMCG00015662 mRNA upstream 137245 15338036 ~ 15339062 (-) True AMCG00015662
AMCG00015664 mRNA upstream 354374 15555165 ~ 15557776 (-) True AMCG00015664
AMCG00015666 mRNA upstream 486851 15687642 ~ 15703121 (-) False AMCG00015666
TU124012 other downstream 432342 14690387 ~ 14738274 (-) False AMCG00015645
TU124002 other downstream 475246 14690870 ~ 14695370 (-) True AMCG00015645
TU123993 other downstream 592983 14574366 ~ 14577633 (-) False AMCG00015642
TU123992 other downstream 597527 14570651 ~ 14573089 (-) True AMCG00015642
TU123958 other downstream 687708 14481194 ~ 14482908 (-) True G99286
TU124200 other upstream 58670 15259461 ~ 15260484 (-) True G99454
TU124288 other upstream 500287 15701078 ~ 15703290 (-) True AMCG00015666
TU124430 other upstream 816792 16017583 ~ 16102456 (-) True G99605
TU124478 other upstream 1020974 16221765 ~ 16222155 (-) True G99646
TU124562 other upstream 1328586 16529377 ~ 16535468 (-) True AMCG00015691

Expression Profile