RNA id: AMCG00015862


Basic Information

Item Value
RNA id AMCG00015862
length 1146
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00015862
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 25405391 ~ 25774014 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAATCAATGGGAGTCACCTCAACAGTACTTCCCTGGTCCCTCACGACGAGCTGGCATTGAACCGTCCTGCCTGGGTGGCGACCACTTTGGGGGGCTTTCTCATCTTCACCATCGTGGTTGATATTTTGGGGAACCTTTTGGTCATTTTCTCCGTTTACAGGAACAAGAAACTAAGGAATGCAGGAAACATATTTGTGagaaGAGGGATGCAGCAGCTAGATTTTGTCTCTAGCCACAGCTCTTATTTCTTCCACACAACAACTGTCCATGGCTGCGgtTGTGTGAATGTGGCAGTGCAAATACTGTGGCATGTCAGTATTGAGTGGAATCATAACCCGGTGGCCAGCTCTTCAAAGCGAGCGAAgTTTAAAACTCAGACAGCAAGGATGCAGCAGGGCCGGTACATTCTCATCTTCTACTTGCTGAGCTCCAGTGCTATGGGTGAGACCAGCTCCATGAGACATGATGAAGCCGTGGAGAATCTATCAGATACCACAGATCACATGACACACAATCGGGCCACAGACTGCCTGCAGATACCTTGGACAGAGGACCCTGCCCCTCCACAATCTCTCTTTGAACGCGGGCCACAGTCTCAGAAACTGCTGAGAGCCCTTCCACTCTACAAGACATCATGGCAGAGTTTCAGTCCAGTTGGAGCCACCCTGCTAAGGCCCACGTCCCAGCCAGGGCCGCGGATCCCCAAAACCTCTGCTGTCTCAACAGAAGCAGAGGGACAGAGGGCCTACACTGCAGGGGCTCAGGCAACGCACCTTCAGAGCACTAAAAGCCTGGTATCCCTCTACCTGGCTAGCTTGCTGGGCCGTGTTAACAGCATAGGCCACATAGGCTGCAGTGTTGGGCCTCTCGCCACCAGGGGGCCTCACCTTTTTTATGCTGGCTGGAGAGTGCTGATTGGGAAAGGCAACAGAGATGTCACTCAGGTGGTGCGGAGCTCTTGGATTGTGCTTGAGACGGGGCGGTTCAAATCCGAGTGGGGGCTGAGACCTGCACATGCTACATCGCTGAGCATGACCTCGGACTCCTCGCAGCACGCCGACATGTCGGAGCACGAGGCCGTGGATGTGTACAGAGACATTGACATGGCGTCGGCGTGGGGAACCTCGAAGTCCCCGCTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126255 lncRNA downstream 2894 25399982 ~ 25402497 (-) True G101103
TU126186 lncRNA downstream 661035 24744082 ~ 24744356 (-) True G101045
TU126181 lncRNA downstream 775608 24629564 ~ 24629783 (-) True G101040
TU126177 lncRNA downstream 785657 24619120 ~ 24619734 (-) True G101036
TU126163 lncRNA downstream 818392 24586485 ~ 24586999 (-) True G101023
TU126360 lncRNA upstream 221829 25995843 ~ 26045342 (-) True G101181
TU126436 lncRNA upstream 477109 26251123 ~ 26253246 (-) True G101242
TU126443 lncRNA upstream 490062 26264076 ~ 26264315 (-) True G101249
TU126523 lncRNA upstream 749645 26523659 ~ 26525730 (-) True G101309
TU126538 lncRNA upstream 800052 26574066 ~ 26574287 (-) True G101317
AMCG00015844 mRNA downstream 787221 24605666 ~ 24618170 (-) True AMCG00015844
AMCG00015843 mRNA downstream 805127 24594299 ~ 24600264 (-) True AMCG00015843
AMCG00015841 mRNA downstream 851436 24543597 ~ 24553955 (-) True AMCG00015841
AMCG00015840 mRNA downstream 945113 24454436 ~ 24460278 (-) True AMCG00015840
AMCG00015839 mRNA downstream 1024922 24354563 ~ 24380469 (-) True AMCG00015839
AMCG00015856 mRNA upstream 20525 25794539 ~ 25812098 (-) True AMCG00015856
AMCG00015858 mRNA upstream 43221 25817235 ~ 25826561 (-) True AMCG00015858
AMCG00015860 mRNA upstream 73022 25847036 ~ 25980178 (-) True AMCG00015860
AMCG00015855 mRNA upstream 268130 26042144 ~ 26045985 (-) True AMCG00015855
AMCG00015859 mRNA upstream 278971 26052985 ~ 26055189 (-) True AMCG00015859
TU126211 other downstream 404501 24992953 ~ 25000890 (-) True G101067
TU125431 other downstream 5125747 20269829 ~ 20279644 (-) False AMCG00015761
TU125314 other downstream 5429322 19974956 ~ 19976069 (-) False AMCG00015752
TU124970 other downstream 6774726 18628343 ~ 18630665 (-) False AMCG00015723
TU124837 other downstream 7567449 17837580 ~ 17837942 (-) True G99939
TU126708 other upstream 2387823 28161837 ~ 28257732 (-) True G101456
TU126809 other upstream 3330215 29104229 ~ 29106160 (-) True G101540
TU127089 other upstream 4392012 30166026 ~ 30168248 (-) True AMCG00015936
TU127207 other upstream 4867180 30641194 ~ 30724429 (-) True G101853
TU127206 other upstream 4945807 30719821 ~ 30724429 (-) False G101853

Expression Profile