RNA id: TU127354


Basic Information

Item Value
RNA id TU127354
length 1043
lncRNA type sense_over
GC content 0.49
exon number 1
gene id AMCG00015962
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 31673484 ~ 31699506 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gccgcccccACCGCCGCCCTCCAGCGGTCCCCCGTCGCACGGCCGCTTCCCCTCACAGAAAGCAGCCCGGTATTGAGCGGGGGCCCGGTCTCTGGTGAGCGCAGCACACAGGACTGCAGCCGAGGGCCTCGCGAGATCATCTTTGAGGGCCGCCCCCGTCTGTGGGATGAGGGgtgctgtctttgttttgttttgtaagaatAGAAGAGTTGAGAGTGTGAAGGCTCTTCCCAGCGACAGAGttagttttcttgtttctttggtCCAGTTTGTGTCTATATAGATATCTGTAGATCTAAAGATCGCCCAGACCCCCGATATCTTTTGTAAATTCCATTTTAtaccttaaaataaatcaaaacaatcgCCACAGCTTGAGGCATTATCTTGGGGGGGGACTAAAACAActaatttttttaatcagtttttattttattttgtacgcACGCACACTCCTGCAGTCCTGTCTCCAGGTTAATGAAACCGATCCTGTTTCGGCAGGAATCTCCAGTGAGAACGCACCGCTGTCGCTCTGCAGCGCAAGCGCATCACGTTCGTACCTCGGCCCATAGCTCCGTGGCATCTTCGGATCGAGTGGGGAAACCCTGAGACAGTGGGACGCTCTCGGGCTGTAAACAGGGCTCTCCTCTCTGTTCCTTAGCAATGCGAGATGGCACCCGTTCCCTCGCCCTCACAAGCGGCGCCCGCTGGGTGTTACCCGGCCTGCGGtccaagtgaaaaataaaacccttatCCTTTTTTAACAAGACCTATGGATTAAGCACAATGCAGCTCAAATTGGGAAATTGGTCCCAGGTTTAatgctttgtttccttttgttgaTGTTCTTTCAGGCGGGCaaatataaagtacatttaagctccatatgtaaatattgtataaaatctCGATTTTGCATATTCgttcatttcagtttaatgttGCTTCTATGCTGCGTTGAAGGGGAACCCAAAATAACCCCCCTGACCTGTAAATCAATCCACTGGCTCCTTCGGgagaaataaagacatttgcAAAGATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127269 lncRNA downstream 702597 30892328 ~ 30970887 (-) False G101911
TU127270 lncRNA downstream 702597 30966692 ~ 30970887 (-) True G101911
TU127213 lncRNA downstream 913060 30754887 ~ 30760424 (-) True G101859
TU127209 lncRNA downstream 926676 30746569 ~ 30746808 (-) True G101855
TU127183 lncRNA downstream 1277242 30394051 ~ 30396242 (-) True AMCG00015942
TU127359 lncRNA upstream 32875 31707401 ~ 31707840 (-) False AMCG00015960
TU127388 lncRNA upstream 149909 31824435 ~ 31824696 (-) True G101996
TU127414 lncRNA upstream 278382 31952908 ~ 31953648 (-) True G102020
TU127416 lncRNA upstream 280120 31954646 ~ 31956400 (-) False AMCG00015965
TU127508 lncRNA upstream 687937 32362463 ~ 32362863 (-) True G102092
AMCG00015958 mRNA downstream 82676 31585936 ~ 31590808 (-) True AMCG00015958
AMCG00015957 mRNA downstream 153767 31488157 ~ 31519717 (-) True AMCG00015957
AMCG00015956 mRNA downstream 432818 31239007 ~ 31240666 (-) True AMCG00015956
AMCG00015955 mRNA downstream 480059 31171439 ~ 31193425 (-) True AMCG00015955
AMCG00015954 mRNA downstream 502167 31163968 ~ 31171317 (-) True AMCG00015954
AMCG00015960 mRNA upstream 32852 31707378 ~ 31717330 (-) True AMCG00015960
AMCG00015961 mRNA upstream 72502 31747028 ~ 31766366 (-) True AMCG00015961
AMCG00015963 mRNA upstream 181096 31855622 ~ 31873893 (-) True AMCG00015963
AMCG00015965 mRNA upstream 280919 31955445 ~ 31970287 (-) True AMCG00015965
AMCG00015971 mRNA upstream 313761 31988287 ~ 31993019 (-) True AMCG00015971
TU127348 other downstream 43918 31629248 ~ 31629566 (-) True G101963
TU127312 other downstream 385691 31267404 ~ 31287793 (-) True G101939
TU127284 other downstream 497739 31171907 ~ 31175745 (-) False AMCG00015955
TU127273 other downstream 588422 31056767 ~ 31085062 (-) False AMCG00015950
TU127207 other downstream 949055 30641194 ~ 30724429 (-) True G101853
TU127411 other upstream 233963 31908489 ~ 31945175 (-) True G102017
TU127552 other upstream 769179 32443705 ~ 32446965 (-) False AMCG00015984
TU127555 other upstream 774974 32449500 ~ 32453409 (-) True AMCG00015985
TU127760 other upstream 1238012 32912538 ~ 32938058 (-) False AMCG00016006
TU127761 other upstream 1242800 32917326 ~ 32922410 (-) False AMCG00016006

Expression Profile