RNA id: TU127213


Basic Information

Item Value
RNA id TU127213
length 420
lncRNA type intronic
GC content 0.58
exon number 2
gene id G101859
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 30754887 ~ 30760424 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTACTGAGCCCTGTGTGTTacacagcactgtgtgtgtgtctcgccTGCTGCTCACATTGGGCCACATTACACCGACACCCAgagacccagagagagagggccgaGCCGGGCTGTGATCGGGTCAGTCCTCTGTGTCTGACGTGTCAATATGAGCTGAGATCCAGGGGCCAGAATCACTCAGAGGACTGTGGAGCTCAGCTGCAGAGGGAGACTCAGTGTCTGTGCAGGAGAGACGGCCATGATGTGAGAGAGAGGCTGGAGGGACACAGGGGACACAGCGGGACCTCTCTGCTCTATCAGAccagacacaggacaggaggAGTGAAGCAAACTGAGACGCCCGTACAAGacactgcagacagggagcagcagcagctgggcTGAACATCTGGAGGAGCCACTGAAATGCCTGGATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127209 lncRNA downstream 8079 30746569 ~ 30746808 (-) True G101855
TU127183 lncRNA downstream 358645 30394051 ~ 30396242 (-) True AMCG00015942
TU127184 lncRNA downstream 358645 30394051 ~ 30396242 (-) False AMCG00015942
TU127171 lncRNA downstream 415159 30336087 ~ 30339728 (-) False G101828
TU127172 lncRNA downstream 415159 30336087 ~ 30339728 (-) True G101828
TU127269 lncRNA upstream 131904 30892328 ~ 30970887 (-) False G101911
TU127270 lncRNA upstream 206268 30966692 ~ 30970887 (-) True G101911
TU127354 lncRNA upstream 913060 31673484 ~ 31674526 (-) False AMCG00015962
TU127359 lncRNA upstream 946977 31707401 ~ 31707840 (-) False AMCG00015960
TU127388 lncRNA upstream 1064011 31824435 ~ 31824696 (-) True G101996
AMCG00015945 mRNA downstream 282459 30465368 ~ 30472428 (-) True AMCG00015945
AMCG00015944 mRNA downstream 304733 30437497 ~ 30450154 (-) True AMCG00015944
AMCG00015943 mRNA downstream 335170 30400376 ~ 30419717 (-) True AMCG00015943
AMCG00015942 mRNA downstream 358580 30394055 ~ 30396307 (-) False AMCG00015942
AMCG00015939 mRNA downstream 389911 30354516 ~ 30364976 (-) True AMCG00015939
AMCG00015947 mRNA upstream 43665 30804089 ~ 30823051 (-) True AMCG00015947
AMCG00015948 mRNA upstream 91397 30851821 ~ 30866786 (-) True AMCG00015948
AMCG00015950 mRNA upstream 258187 31018611 ~ 31061728 (-) True AMCG00015950
AMCG00015951 mRNA upstream 362244 31122668 ~ 31130956 (-) True AMCG00015951
AMCG00015952 mRNA upstream 390217 31150641 ~ 31154111 (-) True AMCG00015952
TU127207 other downstream 30458 30641194 ~ 30724429 (-) True G101853
TU127206 other downstream 30458 30719821 ~ 30724429 (-) False G101853
TU127089 other downstream 586639 30166026 ~ 30168248 (-) True AMCG00015936
TU126809 other downstream 1648727 29104229 ~ 29106160 (-) True G101540
TU126708 other downstream 2497155 28161837 ~ 28257732 (-) True G101456
TU127273 other upstream 296343 31056767 ~ 31085062 (-) False AMCG00015950
TU127284 other upstream 411483 31171907 ~ 31175745 (-) False AMCG00015955
TU127312 other upstream 506980 31267404 ~ 31287793 (-) True G101939
TU127348 other upstream 868824 31629248 ~ 31629566 (-) True G101963
TU127411 other upstream 1148065 31908489 ~ 31945175 (-) True G102017

Expression Profile