RNA id: TU127172


Basic Information

Item Value
RNA id TU127172
length 3604
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G101828
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 30336087 ~ 30339728 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGCTCATGTTACCACAGTTTATTGGCACACGTAATGGGAAAAgcatacataaaatacaccAGTTATGACACAAAGACGCTTCGctaatattttacatgttgtgctgaacaatattaatatgaggATGAAACAAACTGCGAAATCTGTTAGTTTCCTTACAAATGttcacataaatacacaagatCAACAGAAGACAGCTGCGGTCTTTCTGTTTCCGTTTGTTTCTGgttgcaaaaaatatcaaacatGGAATAAATGATAATACTGATAAGGACTAATAAAACCATCAGATGCAACTCaggtacattaaaaacacaaaagctgtAATATTCAGCTGCCCTCCATGTTACAGGTTTCATGGCTTTTAAGATGTCTGGATCATTAGCTTATTTACAAAGCTTCAACCCTTGAGACAGTGTTCCCCAACTGAGGGTCAGGACCGGCTGGATATCCTTTAAAAaccttgttaaaaatgtaattgaaataaaattaagttttaacaacaccaacaacaaacaaatcaagactcgctttcagattcagattttttttccttcaccaGACACTCACTGTGTTGCAATATGCATCATTTTGCTTTTCACTCggcacattttctctctctctctctctcgctgcagATAATCACTGTACACATGAACAAGTCACGCTGTGCAAGGAATGCAGGGTTTGGATATAAAGAATGCTGCTGAAAATATGCAACTCATTTCTGTGGGGGTTGCCGTTCACAGTGGCCCTGCTGTAGACCTGCTCTTGCCAAGACCCGCTGGCCCCGTGTGCTGGGGCGTGGTGTGAGGGCTGAGCTCCATCGCGGAGATGCCCAGCAGCTCTGCCGTCTGGATACGAGGGCCGTGAACGAGCCTCTTGGGGCCCGAGACCCCCTGCGGGATGGATCCCAGTCCCGCTGCTGCCAGACTGGAAAATGTGTCCGTTCTACCTCTTCCACACGTCGAACACAGGAGCAGTGCACTGAGGCTCAAGTCCCTCTAGGAAATGCGAGTCCCACAGTCCGGGCAGTGCTGGTTTCAGTGTGGACAGTGTCATGGCTGGCTGGCATTCCCCATGGGGGCGGCACACAGCTGACCCTGCCAGGGTCTCGGACGGGCTCGAGTCGGCCAGACGCCCACGGGCTCCATAGTGTTCCCAGTGAGCGCCGCGCCGGTCCTCCCCACGAGGCTGTCCTCGGCTGTTTGCACTGGGGACTCGCAGTGTGAGGAGAAGCAGCTGTCTCAAGAGTCTTGGAGTATtcagagtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgcaagctgcctccctccctctcccattAATCACAGGAGTTGCATCCATGAGCAGAGTTGATTAACAATTGGCGATTCCCAATTAAGATGATATGTGACTaaccaaaaaaactaattacatGTTCTAAaatcatcataaaaaataacCCACTTCTAGCACATATAAGCACAGTAATCCATTTAAGTTTACTCTGCCATGGAACTCTGTAAAACTGTGATAATTGGTCAAACGATTTCTTAACCAGATGTTTGTTCTTTTCTGGGCTTGTTCAACTTCTTGCCATGTACAGCAGTTTTGATCGTTCAATACTAAATGATCAATAGAGGGTTTATCGCCCGTTTGCCGTCCAGAAACCCAGTGGTAGACGGACAACAACAGAAAGCAAGGGGGGGACAGCAAAAGTTCAGTtcacataatacaaattatatatatacagctttgcaaaagaaaaacaacaaaatcacgACTTcagcagattctggttcgcaggcCTTTTCAGGCTGAAGAGCGGGGGTCTCAGACTCATCCCTGGGGGCTGCAGTGTCATGTTCCAGCCCTGGGATTGTGGGAAGGGAGTCCAGAGGGAGCAGGTCCAAATCAAATGGCAAATCAAAATGGCAATAGCCTATAATCGGCAGCACACCCACCCCCACTCGTTCAACACCTCGACCGGATGGGGGTGCCTTTAATAACGCCACCGAAAAGCCTCACTATAAAGGACACGGTGTCTTCAAGTGTGGTCCACATTTTTACATCTTCTGCAAAAGCCCGACACACTCCATTTAGTGTAACTGAAAGTGCCAAGTTTAAATCACTTGTGGGATGATCCAAACTGCAGAGTGACATTTAACTGTGGTACTGGTGTTGACTTTAATTTAGTTGTTATAAGTATTAGGCCCATAGATCAGGGTATAGAGAATTAGAAATGAAGTATTGTCAAGAAAGGCCTAAACATCACAATCCAAAGTATGGGAGTAATTTAATACCACTGTTGGGAGTAGATTTGTTGTAAAAAGTGGGCTCTTAACCAATATCAGAGAAGACCAATGAGCCGAAACCAGTGTACAGGGAAAAAAACCTCAAAGAGTAAACGATGCATCCATCTTGTTCCTCTTACCGTCCCATTTCTTATTCCTTCAAAGCCACAGAGTTGTGGTTGTGACCACATGATGGCGAGAAAAGGGCAAACCGGAACggaaaaatcaaaacaaacagcattggtagcttaaaatgtaaaaacgaggaattaaaatatttggaaTATCTCCGAGCGCATCATCATGTTATTCAGTACAATCTGGAGCATGGACTGCGGATAAAACAAACACGAAACGTTTGCCACTTTTTATATCAAAGTTCAAATGGGCTTTCCGTTCAGGAACATGGAAATCCGCTGAAAACGTgtctttccttaaaaaaaacgTTTCTTGCCACCCCCCCATTGGAAATATACATGTCTTTATAACAAACCTGTGATTCAGTCCCAATCGGGAATCACTGGACCCCATCTGTCGACGCCGTCCGTACTAGTCCCGTCGGGAGAGGCAGCTGTGGCCGAGGGGAGCACTAGAGCAACCCACAGCAACACGCCTGCGagactgtgtgcgtgtgtgcgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgcctgtgctaGACTTACCACAAAACACCTGTGGCCGCTGTTTGTTCGAACTAGGAAACTCTGCCTTCGTGAGTGCAGCTGCCAGCTGGGATATGTACAGTGAGCGAGGTCTGCAGTGCGCCCCCTGCTCGATATCgcacacacttttaaattgtgtgtatgtagaaatgtatatttataatatgtatattgaagtcttttttttaaacccccctccccacttcCCCTTCCCCACCTTTGCCAAAATCCTCAAGCCTTACAAGGAAAATTAACATTTGCTGTAAAATATTTCAGGGACCTCACACAACCGTAGTGTTAACTGGACACCCACAGAGCATACAGCGCGTTGctgaggaggaaaacaaaacgaATACGAAACTAAGACCCCAGCTCCAGGCGGCGGCAGCGCGCTCACCGCCGCTCTACTGGGACGGCTGGGGGGCCGTGCTCTCTGGCTTGCTGTCCTGGTTGTTGGCCGGCTTGCTGTTCCACGGGCTGTTGTTTCCGAGCGCCGGCGAGTTATTGAAGTCCTCCTCGTCGTCGATGCCGTTGGCCGCGTCGTACTGCGTGTTCTCCAGCCGCGTGATGAGCCGCTCGTCCTCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127049 lncRNA downstream 360363 29975393 ~ 29975724 (-) True G101728
TU126970 lncRNA downstream 697455 29580849 ~ 29638632 (-) True G101660
TU126852 lncRNA downstream 1066927 29208297 ~ 29269160 (-) True G101571
TU126851 lncRNA downstream 1116602 29216161 ~ 29219485 (-) False G101571
TU126692 lncRNA downstream 2288600 28041563 ~ 28047487 (-) False AMCG00015891
TU127183 lncRNA upstream 54323 30394051 ~ 30396242 (-) True AMCG00015942
TU127184 lncRNA upstream 54323 30394051 ~ 30396242 (-) False AMCG00015942
TU127209 lncRNA upstream 406841 30746569 ~ 30746808 (-) True G101855
TU127213 lncRNA upstream 415159 30754887 ~ 30760424 (-) True G101859
TU127269 lncRNA upstream 552600 30892328 ~ 30970887 (-) False G101911
AMCG00015935 mRNA downstream 161026 30168711 ~ 30175061 (-) True AMCG00015935
AMCG00015936 mRNA downstream 167737 30163273 ~ 30168350 (-) False AMCG00015936
AMCG00015933 mRNA downstream 174471 30150689 ~ 30161616 (-) True AMCG00015933
AMCG00015934 mRNA downstream 211487 30112557 ~ 30124600 (-) True AMCG00015934
AMCG00015927 mRNA downstream 509639 29776779 ~ 29826448 (-) True AMCG00015927
AMCG00015939 mRNA upstream 14788 30354516 ~ 30364976 (-) True AMCG00015939
AMCG00015942 mRNA upstream 54327 30394055 ~ 30396307 (-) False AMCG00015942
AMCG00015943 mRNA upstream 60648 30400376 ~ 30419717 (-) True AMCG00015943
AMCG00015944 mRNA upstream 97769 30437497 ~ 30450154 (-) True AMCG00015944
AMCG00015945 mRNA upstream 125640 30465368 ~ 30472428 (-) True AMCG00015945
TU127089 other downstream 167839 30166026 ~ 30168248 (-) True AMCG00015936
TU126809 other downstream 1229927 29104229 ~ 29106160 (-) True G101540
TU126708 other downstream 2078355 28161837 ~ 28257732 (-) True G101456
TU126211 other downstream 5335197 24992953 ~ 25000890 (-) True G101067
TU125431 other downstream 10056443 20269829 ~ 20279644 (-) False AMCG00015761
TU127207 other upstream 301466 30641194 ~ 30724429 (-) True G101853
TU127206 other upstream 380093 30719821 ~ 30724429 (-) False G101853
TU127273 other upstream 717039 31056767 ~ 31085062 (-) False AMCG00015950
TU127284 other upstream 832179 31171907 ~ 31175745 (-) False AMCG00015955
TU127312 other upstream 927676 31267404 ~ 31287793 (-) True G101939

Expression Profile