RNA id: AMCG00015936


Basic Information

Item Value
RNA id AMCG00015936
length 1018
RNA type mRNA
GC content 0.62
exon number 6
gene id AMCG00015936
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 30163273 ~ 30168350 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgctgctccaccaatcgCAGCGGCGggattctgcagctctgcgTCGAAAGCGGCGCATGACGTCAGCGTCACGTGACTGTCGCTGGCTTCACTGCGCAGACTCGCGCTTTTCACCCAAACAATCATGGCCTCCTCCATGGGCGGGATGTTTCCAGGCCAGCAGCCGCCGGGGCCGCATCCTACCGGAGCCCCCGGTGCCCCAGGACAGCCCGGCCTTCTGCCCGCCCCCGCCGGCTCCCGGACCCAGAACAACACGCTGGTGGACGAGCTGGAGGCGTCCTTTGAGGCTTGCTTTGCGTCCCTTGTGAGTCAGGACTATGTCAATGGCACCGACCAGGAAGAGATCAGAACAGGTGTTGACCAGTGCATCCAGAAGTTCCTTGACGTCGCCAGACAGACCGAGTGCTTTTTTCTGCAGAAGAGGCTACAGCTGTCGGTACAGAAACCCGAGCAGGTTGTCAAAGAGGATGTGTCCGAGTTGAGGAACGAACTCCAGCGGAAAGAGGCCTTGATCCAGAAACACCTGGGAAAGATACGGCACTGGCAGCAGGTCCTGGAGGACATCAACGTCCAGCACAAGAAACCCACGGAGCTGCCCCAGGGACCGCTGGCCTACCTGGAGCAAGCACACCACCGCCACACTGGGTCGCTTCCTCGGTCACCTCTCACCTTGCACCTGGGTGGACCCCCCGCTGGGGTGGTGCTTTCGGCCGGCCACCACCCATCTGCTCTCTCGCTGTGCCTCCCCTTCGGGCACATAGAATCTGCTGCTAGAGTGGCCCCCCTCCTCGAATGCCACTCATCTTACACCTGTGTGGACCCCTTGCACGGGCGACCACCATCTTCTGCTGGGGTGGTGCTTCTGGTTGGCCACCACCTGTCTGCTGCGCTGCTCCTGGCACTTCGGCGCTGCGTTGGCGTCTTCTTGGAAAGCCTCATCATCGTGGCCGGGCTGCTGTGGGTACCCCTGGCACTGCTCCCCCGGCTGAGGGCCCTCTTCGTCAGCGGGGAGCTGTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127049 lncRNA downstream 187549 29975393 ~ 29975724 (-) True G101728
TU126970 lncRNA downstream 524641 29580849 ~ 29638632 (-) True G101660
TU126852 lncRNA downstream 894113 29208297 ~ 29269160 (-) True G101571
TU126851 lncRNA downstream 943788 29216161 ~ 29219485 (-) False G101571
TU126692 lncRNA downstream 2115786 28041563 ~ 28047487 (-) False AMCG00015891
TU127171 lncRNA upstream 167737 30336087 ~ 30339728 (-) False G101828
TU127172 lncRNA upstream 167737 30336087 ~ 30339728 (-) True G101828
TU127183 lncRNA upstream 225701 30394051 ~ 30396242 (-) True AMCG00015942
TU127184 lncRNA upstream 225701 30394051 ~ 30396242 (-) False AMCG00015942
TU127209 lncRNA upstream 578219 30746569 ~ 30746808 (-) True G101855
AMCG00015933 mRNA downstream 1657 30150689 ~ 30161616 (-) True AMCG00015933
AMCG00015934 mRNA downstream 38673 30112557 ~ 30124600 (-) True AMCG00015934
AMCG00015927 mRNA downstream 336825 29776779 ~ 29826448 (-) True AMCG00015927
AMCG00015926 mRNA downstream 393848 29765408 ~ 29769425 (-) True AMCG00015926
AMCG00015923 mRNA downstream 440326 29705975 ~ 29722947 (-) True AMCG00015923
AMCG00015935 mRNA upstream 361 30168711 ~ 30175061 (-) True AMCG00015935
AMCG00015939 mRNA upstream 186166 30354516 ~ 30364976 (-) True AMCG00015939
AMCG00015942 mRNA upstream 225705 30394055 ~ 30396307 (-) False AMCG00015942
AMCG00015943 mRNA upstream 232026 30400376 ~ 30419717 (-) True AMCG00015943
AMCG00015944 mRNA upstream 269147 30437497 ~ 30450154 (-) True AMCG00015944
TU126809 other downstream 1057113 29104229 ~ 29106160 (-) True G101540
TU126708 other downstream 1905541 28161837 ~ 28257732 (-) True G101456
TU126211 other downstream 5162383 24992953 ~ 25000890 (-) True G101067
TU125431 other downstream 9883629 20269829 ~ 20279644 (-) False AMCG00015761
TU125314 other downstream 10187204 19974956 ~ 19976069 (-) False AMCG00015752
TU127207 other upstream 472844 30641194 ~ 30724429 (-) True G101853
TU127206 other upstream 551471 30719821 ~ 30724429 (-) False G101853
TU127273 other upstream 888417 31056767 ~ 31085062 (-) False AMCG00015950
TU127284 other upstream 1003557 31171907 ~ 31175745 (-) False AMCG00015955
TU127312 other upstream 1099054 31267404 ~ 31287793 (-) True G101939

Expression Profile