RNA id: TU124167


Basic Information

Item Value
RNA id TU124167
length 626
RNA type TUCP
GC content 0.56
exon number 5
gene id G99426
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 15102617 ~ 15189394 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACACTTCACACAATGGGATATATAAGGGTCTTTCTGCTGTGCCTCGCCTGCTTCTGTGCTCCAGGTCCAGCTGCTGCCCAGTCTGCACAGAGGCAGCTGAAGGGCACTGTGGGAGAGTCGGTCACATTCCCAGCCCGAGTGGCAGAGCGGGGGTTCCTGTCATATGGAAACAGTGGCAATATTGCATCAGTGGCGCCAGGGAaaggtgtgagtgtgtttggGGCGCAATTCAGGGGCAGAGTGCACTGGGACAGCAGGACTGGACACTTCCAGATCACAGATCTGAGCACACAGGACTCTGGGGAGTATGGAGTGCAGGACATCGGAGGAGATGGACCTGTCACAACAATATTCCAGCTGACAGTGTACAaccATGTGTCCAAACCTCAGGTGTCCAGTGATACCCAGGCCAGTGCTGGGAGCTNNNNNNNNCTGTGCTCTGTGTCCAATGGGAGAGAGGTGACACTGTCCTGgtacagagagggggaggagaagcCCCTGAACCACAGCAGCTCCCCTGATCTCAACACCACCCTGACTCTCCCTCTGGAGACAGAAGGACTCTCTCACTCCTACAGCTGTGTGGCCACCAACCCCGTCAGCACTGAGAGAGTCACAGTCAAC

Function

GO: NA

KEGG:

id description
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124145 lncRNA downstream 50087 14995538 ~ 15052530 (-) True G99412
TU124144 lncRNA downstream 105853 14992906 ~ 14996764 (-) True G99411
TU124142 lncRNA downstream 119045 14981291 ~ 14983572 (-) True G99410
TU124122 lncRNA downstream 195292 14905981 ~ 14907325 (-) True G99396
TU124121 lncRNA downstream 199690 14902701 ~ 14902927 (-) True G99395
TU124192 lncRNA upstream 60507 15249901 ~ 15252717 (-) False AMCG00015660
TU124193 lncRNA upstream 60507 15249901 ~ 15252717 (-) True AMCG00015660
TU124194 lncRNA upstream 60507 15249901 ~ 15252717 (-) False AMCG00015660
TU124223 lncRNA upstream 124759 15314153 ~ 15314453 (-) True G99476
TU124269 lncRNA upstream 375732 15565126 ~ 15565391 (-) True G99513
AMCG00015652 mRNA downstream 146787 14949243 ~ 14955830 (-) True AMCG00015652
AMCG00015651 mRNA downstream 159077 14940046 ~ 14943540 (-) True AMCG00015651
AMCG00015649 mRNA downstream 174512 14921312 ~ 14928105 (-) True AMCG00015649
AMCG00015647 mRNA downstream 307192 14780269 ~ 14795425 (-) False AMCG00015647
AMCG00015645 mRNA downstream 409336 14680794 ~ 14693281 (-) False AMCG00015645
AMCG00015658 mRNA upstream 46740 15236134 ~ 15244894 (-) True AMCG00015658
AMCG00015660 mRNA upstream 60583 15249977 ~ 15252721 (-) False AMCG00015660
AMCG00015662 mRNA upstream 148642 15338036 ~ 15339062 (-) True AMCG00015662
AMCG00015664 mRNA upstream 365771 15555165 ~ 15557776 (-) True AMCG00015664
AMCG00015666 mRNA upstream 498248 15687642 ~ 15703121 (-) False AMCG00015666
TU124012 other downstream 364343 14690387 ~ 14738274 (-) False AMCG00015645
TU124002 other downstream 407247 14690870 ~ 14695370 (-) True AMCG00015645
TU123993 other downstream 524984 14574366 ~ 14577633 (-) False AMCG00015642
TU123992 other downstream 529528 14570651 ~ 14573089 (-) True AMCG00015642
TU123958 other downstream 619709 14481194 ~ 14482908 (-) True G99286
TU124200 other upstream 70067 15259461 ~ 15260484 (-) True G99454
TU124288 other upstream 511684 15701078 ~ 15703290 (-) True AMCG00015666
TU124430 other upstream 828189 16017583 ~ 16102456 (-) True G99605
TU124478 other upstream 1032371 16221765 ~ 16222155 (-) True G99646
TU124562 other upstream 1339983 16529377 ~ 16535468 (-) True AMCG00015691

Expression Profile