RNA id: TU125866


Basic Information

Item Value
RNA id TU125866
length 2266
lncRNA type intronic
GC content 0.41
exon number 1
gene id G100776
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 23216051 ~ 23218316 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGAGATTCGCGattgtgagtgtttgtgtgtgtgtgtgtgtgtgcgtgtcagtatTTCACAGGAACTTCATTACAACGCAGTATTCATGTGCGATGCAAGCAGTCCCCCTTTCACTGTTCAGGTGGACTAAATGCAGACATGGCTTTGCAGAACTGTCACAGTCCCTAAAGTACCCGGAGTTTACAGCCACAGCACCAATGCATTTGAAGACCAGCTCTCCcaaactcaaaataaaatatatagggCCTATAACTATATGtgattaattttttaatgtgaatctTTTAGGGCATTAAGTAATCATTAATTCTTAATTTATCCATTGGTGGTTGGGTTGAAGgtctgatttaatctgggcctaAGTGACTGAGAACTCAATCTGGAACAAGAAACAGAAGACTTTGACATTGAAGGTTTGGAGGTCCACTCAGCCAGATGTGCTGGATAAAAAATAAGCAAGCAGGGGACATAGAAAAACTTTCATTGGGTATTCAAACAACACACAATACTCCCTTTGCCCTGGAAGCGACTGAGCAGCTATCCACTGTGGCCTGTGAGGGCTGCAGTGACACTgcagtgcgtgtgcgtgtgcgtgcgctATACATTCTAAACAAAAGCCAGAGAAAAgccttcccctctccctctgacTTGCATCCCAACTGACGTATTTTTATGCActttatttgatataattttGTTAAGATTTGTTGCTATTGGTTTGAAAGTTTGGGTGGTTTTACCAACGACTGCTCCAACACCAGTAAGATTGAATCCATTGACTCCATTGATGCAGATACCAAATATATAGTCATACTGGATTCAATTTCTTTAGGGAACCAGTCTAAGCAATTGTGAACAAAGCAATCCTGATGAGAGTCGGGGAGGGACAGCTGgaacagggacagggacagagttCTTTTGCGCTGCAGAATTGGAGGTGGAGAGCAGAGGGACACAACTACAGTCAAACACAATCATTGACTAAAGCAGTTTTCTCTTGGCATAATTATTCACTGAGGTTCATTCCTGCAGCTTTTAGATGACAGagatgtttctttcttcttttctgtctcGCTATTTCTCTGTACacttctctccctttctctgttATTCCCAATGCCAGAGAAATCCTCCGACTGACCAGTGAACTGTGACATCCTCGTTCCTGACAATCACGTCCCTCTGCTGTGACCTGATTGATGCACTGTGTTTCAGcgtaccccccccaccctgctctcGCTGTGACCGAAGAGTCCTATGTTCTCATTTTCCAACACCATCGCCACGCTACTCTGGTGCTGAACTCCGAGTCATTATCCTTAAACATCATCCATAATTCAACAGAGCTCAGCCATAAAATATTGACAGGTAGAAACCCAACAGAATCTACTTAAATCACTGCTCTTGTTTTCATCACAAGAGCAGTGTTTATGTATGAGCTATTTTAACTGTGATTCCCTCTTTTGTGCTCCTTTATTGCTGCCGTGAATAGTTTTGGGGATCGCATTTGGCTTGGAATTTGCTTTTCTGTCCTGTTACAAATTACATGGACCAGCTGAGATGGAATAAGATGGGGGACAGATGTACATTTATACAGATGGTCATATCTCACTCTGACACATCCAGAGTAGCATCGGCTGATGTTTTCTGTGCTGGACTCAGGTTGAAGTGAAACTTTCAGACAATTTCGATTGGCATTCCCTCCACTAGTATTGCAAACCATTTAAATCATAAAGAGGCTTTCATATTTCTAAAAGTCTTTAttccttttctatttctgttaCAATAAGGTGctactgtcttttttttttcaatatggaTTGAGCCCAATGAGATTGTGTTGTTCTGGGTTTAATTACATCAGTGTTCTTGCACACAGTGGAAGTTCTGTGTGTTGAGCCATATTCCATTGACATTAACCTAGTGATCTTTATTCATTGATTGGCACCAGCTACTCACAAACTACAGCTTTGTAAATATCTCGGTCTTTGCACAGTACCTCAATGTCTGTatgatgtgatttaaaaaaaaaaaatcaaaagaaaagtcTTTCTATATGCTTTACAATACCTTGTCCCATTAACAatttgcacttatttttttgctgtatgATGTTCTGTACATTCAGTTGAAAGAGGGTTTCTTTGTGTTCTGGCTAAAGAGAGCTGTTTTCATGCTCGGGCCATGGAAACCAagatattgtatataatatgtatgtatttttattcatatgcaTATAAATCTATATGTCTATGTATATGCA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125778 lncRNA upstream 292655 22835254 ~ 22923396 (+) True G100709
TU125775 lncRNA upstream 395348 22820501 ~ 22820703 (+) True G100707
TU125697 lncRNA upstream 766835 22446374 ~ 22449216 (+) True G100641
TU125695 lncRNA upstream 927203 22288623 ~ 22288848 (+) True G100639
TU125610 lncRNA upstream 1401336 21814371 ~ 21814715 (+) True G100568
TU125896 lncRNA downstream 65375 23283691 ~ 23284077 (+) True G100801
TU125958 lncRNA downstream 543975 23762291 ~ 23762523 (+) True G100858
TU125964 lncRNA downstream 621482 23839798 ~ 23961637 (+) True G100863
TU126009 lncRNA downstream 852510 24070826 ~ 24156851 (+) True G100903
TU126087 lncRNA downstream 1266513 24484829 ~ 24549300 (+) True G100956
AMCG00015815 mRNA upstream 35135 23175632 ~ 23180916 (+) True AMCG00015815
AMCG00015818 mRNA upstream 58789 23151053 ~ 23157262 (+) True AMCG00015818
AMCG00015817 mRNA upstream 70337 23135578 ~ 23145714 (+) True AMCG00015817
AMCG00015813 mRNA upstream 99268 23110272 ~ 23116783 (+) True AMCG00015813
AMCG00015810 mRNA upstream 236059 22976920 ~ 22979992 (+) True AMCG00015810
AMCG00015816 mRNA downstream 37774 23256090 ~ 23273675 (+) True AMCG00015816
AMCG00015814 mRNA downstream 57640 23275956 ~ 23281282 (+) True AMCG00015814
AMCG00015820 mRNA downstream 104843 23323159 ~ 23337368 (+) True AMCG00015820
AMCG00015827 mRNA downstream 125362 23343678 ~ 23367384 (+) True AMCG00015827
AMCG00015826 mRNA downstream 149880 23368196 ~ 23392479 (+) True AMCG00015826
TU125724 other upstream 535278 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 2947766 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 4444085 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 4890147 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 6084302 17098459 ~ 17131749 (+) False AMCG00015703
TU126202 other downstream 1646773 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 3045599 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 3154837 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 4672236 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 5359184 28577500 ~ 28580829 (+) True AMCG00015901

Expression Profile