RNA id: AMCG00016045


Basic Information

Item Value
RNA id AMCG00016045
length 963
RNA type mRNA
GC content 0.50
exon number 1
gene id AMCG00016045
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3783534 ~ 3784496 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCAAAGGACATAACCTCTCCTGTAATTGCTCCATAGACGACTTCAAATGCAGTGTGTACCCGGTCACTTACCTGGTGATCTTTGCTGTGGGCCTCCTGGGGAACACGGTTTCCTTGTACATCTTTGCCAGAGTGTGTAAGAAGTGGACATCAGTTAACTTGTACATGATGAACTTGCTGATCTCAGACCTGATGCTGGTCTGCTCCTTGCCCTTCCGGGTGTCTTACTACATGATGGATGTATACTGGGTGTTTGGAGACATCATGTGCCGTGTCATATCCTATATCTTTTACATCAACATGTACTGCAGCATCTACTTCCTGATGGTGCTCAGCATCATGCGCTACCTAGCCATAGCTCACCCATACAAGTATGTAAAGCTGCAGACCGGCAACAGCGCCAAGGTGGTCTGTTTCGTGGTCTGGTTCTTTGTGGCCCTGGCCTCCACTCCGCTCCTCAGTGCAGGCAGTGAAGTAGACAGAGACAAAATCAAATGCCTGGAGCTGGGGACCACTCATGTCAGCACCATAATCGTGATGAATTATGTGGTGGCTTTTGTGGGCTTTGTTGTGCCCTTTCTTGTCATCTCCTTCTGCTACTTCCATGTAGTGAGGAGCTTGCTGAAGCCCAGGGATACCCAGAAGAAGAGACCTTGCTACAAGAAGTCTACAGCCTTGGTGATCATTGTCCTCTGCATCTTCTTGGTTTGCTTTTTGCCCTACCACCTGGTCAGGACTTTGTTCCTGGAGGCCGAAAGGCAGGCCGCCCAAGACTGCGAGTCCTGTGATTACATCATCTTAATTCGGAAAGCCGCGGTACTGACTCTCTGCCTTGCAGCTGGCAACAGCTGCTTAGACCCTCTTTTGTTCTTCTTCATAGGGGAGAACTTCAGGGGCTGGTGGAGGGAGAAGACACGCACAACTGAACTGAAGGAACTGAACTCCAAAGAGCCACAGTGA

Function

GO: NA

KEGG:

id description
K04323 CYSLTR2; cysteinyl leukotriene receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13179 lncRNA downstream 41272 3741593 ~ 3742262 (-) True G10624
TU13140 lncRNA downstream 236443 3490758 ~ 3547091 (-) True G10592
TU13146 lncRNA downstream 261499 3514439 ~ 3522035 (-) True G10596
TU13145 lncRNA downstream 261499 3516013 ~ 3522035 (-) False G10596
TU13101 lncRNA downstream 404949 3378378 ~ 3378585 (-) True G10556
TU13241 lncRNA upstream 85228 3869724 ~ 3912272 (-) True G10673
TU13262 lncRNA upstream 187390 3971886 ~ 3973511 (-) True G10692
TU13266 lncRNA upstream 193063 3977559 ~ 3979117 (-) True G10696
TU13268 lncRNA upstream 203157 3987653 ~ 3987955 (-) True G10698
TU13286 lncRNA upstream 382282 4166778 ~ 4170338 (-) True G10715
AMCG00016047 mRNA downstream 114976 3622918 ~ 3668558 (-) True AMCG00016047
AMCG00016046 mRNA downstream 240998 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016042 mRNA downstream 280683 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016041 mRNA downstream 307541 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016029 mRNA downstream 990088 2785152 ~ 2793446 (-) False AMCG00016029
AMCG00016050 mRNA upstream 38755 3823251 ~ 3835355 (-) True AMCG00016050
AMCG00016049 mRNA upstream 101802 3886298 ~ 3920503 (-) True AMCG00016049
AMCG00016048 mRNA upstream 144238 3928734 ~ 3947435 (-) True AMCG00016048
AMCG00016053 mRNA upstream 320235 4104731 ~ 4105731 (-) True AMCG00016053
AMCG00016058 mRNA upstream 591949 4376445 ~ 4378160 (-) True AMCG00016058
TU13149 other downstream 244341 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 748351 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1072849 2710399 ~ 2710685 (-) True G10420
TU13237 other upstream 123263 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 4407050 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 7062338 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 7062435 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 8538665 12323161 ~ 12329033 (-) True AMCG00016211

Expression Profile