RNA id: AMCG00016046


Basic Information

Item Value
RNA id AMCG00016046
length 2088
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00016046
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3528842 ~ 3542536 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAATGTCACTGGCCAAGGCACGGGACCGGTCAGCAAAGGGCATGGAGGCCACGGAAGACAAACCCGTCAAGCCATCGGTGGCAGAGCTAGCAGGGAAGTTCAAAGGTCAACCATTGTCCTGTCCTGCAGGAACTGAAGGGAACAGACCAATACGGAGAAGACCTCCAAACTCCCTTAAACTTAAGGACCCCGGACATGAGGAGAAAACAGCCACCACCTCTTCACATCCTCCCAAGGTGAAGCCCAAGAATTCACCGCTCATTGAAAAACTGCAGGCCAACCTCGCTCTGTCGCCCACCGCCCTGCTGCACTCCCCCAAGAGCCCCGGGATCAAACTGCAGCCCTCTCCCTTTGTCAGCCCCGCCACCACTCCCAGCAGTCCCAGTGTGCGCTTGCACTCCAGTGAGGATGAGACGCCTGCTAGTTTTGAGAAACCAGCGGAGGGCGTTATTCTGCCCAGCATCCAAAAGGGACGGGCACGTGTCTCCATCAAGCGCAGACCACCCACCCGACAGCACAGGAAGTCTGCTTCAGAGGAGCCCACTGGCCAAAGCAGCACACCCGCCAAGGAACACCCCCAGCAGAACGAGGAGGACGATGTTTTTGAGATGCCCAAGGAGCCCGAAGAGTTGTTAAGAGAGGCACAGAGCATTGATGTAGAGAAAACACAGGATGAGCCTGGGCCTAAGGACTTGCAGGAAAAAGAGGAGCTTAAGTCTGAAGAAGGAGCACAGGACAAGACCCAGGAAGCTCCAGCCaaagaaatgaaaagtgaaGCTGTAAAGGAGCCCAGCCAGTATTCTCCACTTGAGCCCCAGGCTTCGGACAGTGTGCCTCAGGGCCCGATAGAAACAGACCCAGAGCAAGCCTGTCCTGACAGGGACGACAGCAATGTCAAACCAGAGGAAGAAACTAGTCCACCAGCAGAGGAAGAGAAGGCCCAGAAAAGCAGTGGAGATGAGAAGGAGCAGACCAAAGCCACTGGAGAGTGACACATCCTCAGAAAAAACCTGTCTAAATCACTGAAGGCTGCATTACCTGCCAACAGCCACCCCCACAAAAGacccaagaaaataaatgagctTGGATACTCAGCCAGTCCTGGTCTCAAGAGAACCACAAGAGTCTTTGATTGTGTCATATTAGTTCAATTTATCCTGGAGAGCTGCTCACTAAGACACAGGTCCCCTATACCACCAGACACAATATTCGATCTGTATGGGTTTCCATAGGGATGACATCAGGAATTAAGTCAGGAAAGAAACAAATTTGTGTAAGAAGTCATCTTCTGTCTTTGGTAACTGTATTAAGCTTTTTAGTATCTCAAGGAAGCAGACTGTTTTGAGGTAACGATTTGTCCTTCAGCAATGCACATGTTACCTtatggagttttttttaatgattttttagTGTTACTTAAAGTTTTAatccaaatttaaaaataagtgatCGTATGTCTAACACTGTAACAGGTTGTCGGAGTTGTGGTGTTGTGACATTGAAAAGAGGCTTGTAATTCTGAGACCTCTCCAGCAGGTGGCagtatgtgtaaaataaatcagtgacAGTAGGGGCAGCTTACTATTCCTACATTGCTACTGCATATCATAAAGACAAAAGGCCTGGattgtaatattttgcaatatttatgcataataaaatattaatagaaCATGTCTGGGAGtttcttacattattattagtattgttgttgtttgtaaagGACTGGCTCAGTGGTTAAACTTAAGGCtaattaaatgttcaattgatgatgacaattataaaaataataggtATATGATAGTGaattattcattatatataaatgtacaatcACCCATACTCAGCACtgtgaaaaaatgaatattaaataaaaacaaccttaTAAAGTCCCAAAATTCAATCAAGTTAACTTTTAAAaggtgtagtgtgtgtagtgtagtgatTTATACCACTTATTTTGCATAACATgccatgtaaaatacatttgaaacacCATCTGAAATTTACAAACAATCtaaaattttatttataaagataCCCCTGAGGAAtgaggaattattattattattattattattatt

Function

GO: NA

KEGG:

id description
K18615 RCSD1, CAPZIP; CapZ-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13146 lncRNA downstream 6807 3514439 ~ 3522035 (-) True G10596
TU13145 lncRNA downstream 6807 3516013 ~ 3522035 (-) False G10596
TU13101 lncRNA downstream 150257 3378378 ~ 3378585 (-) True G10556
TU13093 lncRNA downstream 156944 3371541 ~ 3371898 (-) True G10548
TU13074 lncRNA downstream 247649 3280490 ~ 3281193 (-) True G10529
TU13179 lncRNA upstream 199057 3741593 ~ 3742262 (-) True G10624
TU13241 lncRNA upstream 327188 3869724 ~ 3912272 (-) True G10673
TU13262 lncRNA upstream 429350 3971886 ~ 3973511 (-) True G10692
TU13266 lncRNA upstream 435023 3977559 ~ 3979117 (-) True G10696
TU13268 lncRNA upstream 445117 3987653 ~ 3987955 (-) True G10698
AMCG00016042 mRNA downstream 25991 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016041 mRNA downstream 52849 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016029 mRNA downstream 735396 2785152 ~ 2793446 (-) False AMCG00016029
AMCG00016028 mRNA downstream 812990 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016027 mRNA downstream 857133 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016047 mRNA upstream 80382 3622918 ~ 3668558 (-) True AMCG00016047
AMCG00016045 mRNA upstream 240998 3783534 ~ 3784496 (-) True AMCG00016045
AMCG00016050 mRNA upstream 280715 3823251 ~ 3835355 (-) True AMCG00016050
AMCG00016049 mRNA upstream 343762 3886298 ~ 3920503 (-) True AMCG00016049
AMCG00016048 mRNA upstream 386198 3928734 ~ 3947435 (-) True AMCG00016048
TU13017 other downstream 493659 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 818157 2710399 ~ 2710685 (-) True G10420
TU13237 other upstream 365223 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 4649010 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 7304298 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 7304395 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 8780625 12323161 ~ 12329033 (-) True AMCG00016211

Expression Profile