RNA id: AMCG00016884


Basic Information

Item Value
RNA id AMCG00016884
length 3450
RNA type mRNA
GC content 0.50
exon number 14
gene id AMCG00016884
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33307741 ~ 33318582 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCTTGCGTCATGAATAAGTAATGAACGTCTGCCATCTGACGCAACCCCCACGCAGAGATTCCGCAGCCGGTGCGAAGGGCAGTTTGGACGGGATACGAGTCGTGTTTTTACTGCGTGAGAATCGTGCGATTGACTCCTCCAgtggaggaaaaagaaaagcacaataaaGAAACAACGATACACGCAAGCTTCTGAAAAGACGCAGGGAGTTTGCAGGAAAGCCAGTTATTCATGATGACTGCATGGTGTAGAGTTGTGCGCATTCAACTTCCAGGATCTAAATTTTCTGCCATGAGGACGCTGGCTGTGTTGcccctgctcctgctgctgctgctgccgcccgTGTCGTGGGCGCGCTTCGACGAGTTTGACGACGGCGAGGAACTGGCAGAGTTCGACGACAACGACTTTGCCGAATTCGAGGACGTGAGCGAGGACCCTCCTACCGAGGCACCCCCACGCACCGTGACGGCCCAGGACGATGAGGATGAAGCCACTGTGGAGCTGGAGGAAAATCAGGATGACTTTGAGGACTCCGAGACACCGGATGAAGACGTCTACAAATACGATGCCGAGGAATTTGAAGGTTTTGAGAAGCCCCCTCCATCTTTTAAGGATCCCATCAACTACATCGATGTTCCACCTCACCTGCAGAACAGCTGGGAGAGCTACTACATGGAGATCCTCATGGTGACGGGTCTGCTGGCCTATATCATGAACTATATCATCggcaagaacaagaacaacCGGCTGGCGCAGGCCTGGTTCAACTCCCACAGAGAGCTGCTGGAGAGTAACTTTGCCCTTGTGGGTGATGATGGCACCAGTAAAGACGCAGTGAGCACGGGCAAGCTGAACCAGGAGAACGAGCACATCTACAACCTGTGGTGCTCCGGCCGGGTGTGCTGCGAGGGCATGCTCATCCAGCTCAAGTTTCTGAAGAGGCAGGACCTGCTGAACGTGCTGGCGAGGATGATGAGGCCGGCCGGCGATCAAGTGCAAATCAAAGTCACCCTGGTCGATGAAGACATGGATACGTTTGTGTTTGCCGTGGGGACGAAGAAGGCCATGGCTCGGATGCAGAAAGACATGCAGGACTTGAGCGAGTTCTGCAACGACAAACCCAAATCAGGAGCCAAGTATGGGTTGCCAGAGTATCTGGCCATTCTATCTGAGATGGGAGAGGTGACTGAGGGAGTTATGGACAATAAGaTGGTACATTTCCTCACCAATCACGCCGACAAAATCGAGTCCATCCATTTCTCGGACCAATTCTCTGGTCCAAAACTTATGCAAGAGGAGGGACAGCCCTTGAAGCTGCCCGAGACGAAGAAGACGCTTTTGTTTACATTCAAtgTGCCTGGCATGGGCAACACGTCGCCCAAAGACATGGAGTCCCTGCTGCCCCTGATGAACATGGTGATCTACAGCATCGACAAGGTCAAGAAATTCCGCCTCAACAGGGAGGGCAAGCAGAAGGCCGATAAGAACCGTGCGCGCGTGGAGGAGAACTTCCTGAAGCTGACGCACGCCCAGCGGCAGGAGGCGGCCCAGACCCGGCGCGAGGAGAAGAAGCGAGCCGAGAAGGAGAGGATCATGAACGAAGAGGACCCGGACAGACAGCGCCGCCTGGAGGAGGCTGCGCAGCGTCGGGAGCAGAAGAAGATGGAGAAGAAGCAGATGAAGATGAAGCAGATCAAAGTGAAAGCCATGTGAAGAGCTGCATTCCTGTGAGCTCCTGACAGACAGCACAACACCCCCCCTTCCCATACCTACAGCCCCTCTGCCTCCCCAGCACACACTGTCCTGGCAGGCCCAGGTGCCTCTGTCACCTCTGGCCGGTATTAAGATGGGTGTCCCTTAACCTACCGTGGTCGCGTGTATATGTGAACCCAGGTAGAACCAACCCCAGAGAAGAAGTACAAGTGGTGCATTTGGTCGTAGTTGATAGGGTTTCGGATGATCTCTTATGGCCTGTGCTTTCAATTGTACACATTCTTTTCGGCGTTTTTGTTTTAGCTTATTgatagtttttgtatttttttctaccATCTCGCTTTTAAATTGGATTGGATGTTCTGTGCAAAATAATGAACTGGATTGAAAATATCCTTGAACACTTTTTTAACCTGTACGTGGGTGTCTCGAACACCCAACTGAAGTTTCCCTTTTAAGAGATCAGTACTTTAAATGATGTAATAAAAATTGATAAATCTGCTAAATCACTTCAACTTTTctgaacaatttgtttttatcatcacAAATATGGCCTGGGTTTGGATGTCGGTATTATAAACACTACCTTATACACTGCAGAAGCATTAATGAGGTTTGGATTACAATTGGCAGGAAGTAATCAAGTCATGCTTGTTCTGAAGGGTTTGGAAATCCCTGCATATACACAACGGTACGGGCAGTTAATGTGAGGAACCATCTTAATAGCGGCCAGTGAGAATCAAGAGCAAAAGAAACTCCTTGATTTATGTTGTTTGACCAGCCTCTCGGTGTCTCTGTGGATTTCAGCCTGGGGAGGGGAGAGGCGCTGGCTGACAGTGCGCACCGGTCTCTGAGAGGCTGCTCTTTCTGCGATTTCTGTTCACACCCCCTGTGAGATCTGGCCCCAAGACTGTGCCACTTGGAAACCCCACATGGGACAACTTGTCAAGGATGTAGCCTCATGTGAAAAGGAACAGTTGGTAGTCTTCCTGAGCAAGGTGGCTCACTCCAGACTCCACACGGGCACCTTCTGATGTAGTCGGTACCGATTAGTCTTCTAACCTTGAATGCTGTTGGCTTGGTCCAGAATGTCAAGAGAGTTGTTCAATCATTGTAGTTTTCCCTCCTGAGATGCGTCTTAttttatccccccccaccccagtacGAGATTGGCAGCAAATGTTCCGAAATCTTTTTCTGCATGATGTTATACAGCTTGGCTTTTCTAATTCCAAGGTATTTGTTTAACAAAGAAGTGGTGACCAAAGCGAGATCAGATTCATTTTCCATTGTCTGTCTTTTGCCACAAGTAAACGGAGGATCTTCTTGAACTTGCAAGCTGCTGGTGAAGTGTGTCAGTACGTGGCTGTGGGTGGGTTGGTGGTTTCGGTTGGGGTATGTGTTGCACAGTGGCTGGTGTGGGCAGTTTGAGGCAGGTATTTAAAATGGATGCTGGAGCGGGACTGTGTGCAGAGTGGGGAGGGGCTCCTTCGTGGCTCTGGGACTGGACTGGGACTGCTGTGCTTCTGCTCACTGATGTTGTCTGGAAGAGCAATCaagacatttactgttttttgttgtctgctgtttctcttttcattttttttattttttattttcattctgggCCTCCTGGTCAGTGAGTGCTGGTACAGTGACACTGGGGAGGCAGGCCTGGGAGAATGCAGCTATTTGAATAAATCAGGGAGGGGTCTTCTAAACCACACCACGG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24962 CCDC47; PAT complex subunit CCDC47

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20357 lncRNA downstream 15492 33292031 ~ 33292249 (-) True G16378
TU20356 lncRNA downstream 23514 33284014 ~ 33284227 (-) True G16377
TU20354 lncRNA downstream 51359 33255653 ~ 33256382 (-) True G16375
TU20285 lncRNA downstream 323277 32984254 ~ 32984464 (-) True G16325
TU20247 lncRNA downstream 446144 32859241 ~ 32861597 (-) True G16293
TU20405 lncRNA upstream 6504 33325086 ~ 33328341 (-) True G16422
TU20499 lncRNA upstream 309518 33628100 ~ 33628919 (-) True G16502
TU20502 lncRNA upstream 315545 33634127 ~ 33634339 (-) True G16505
TU20506 lncRNA upstream 322616 33641198 ~ 33641979 (-) True G16509
TU20507 lncRNA upstream 324396 33642978 ~ 33643661 (-) True G16510
AMCG00016879 mRNA downstream 112485 33191702 ~ 33195256 (-) True AMCG00016879
AMCG00016877 mRNA downstream 135808 33168630 ~ 33171933 (-) True AMCG00016877
AMCG00016878 mRNA downstream 146782 33155283 ~ 33160959 (-) True AMCG00016878
AMCG00016876 mRNA downstream 159312 33141438 ~ 33148429 (-) True AMCG00016876
AMCG00016869 mRNA downstream 373235 32931693 ~ 32934506 (-) True AMCG00016869
AMCG00016888 mRNA upstream 14880 33333462 ~ 33348062 (-) True AMCG00016888
AMCG00016887 mRNA upstream 63302 33381884 ~ 33390755 (-) True AMCG00016887
AMCG00016889 mRNA upstream 73207 33391789 ~ 33434651 (-) True AMCG00016889
AMCG00016893 mRNA upstream 120970 33439552 ~ 33473811 (-) True AMCG00016893
AMCG00016894 mRNA upstream 155428 33474010 ~ 33479455 (-) True AMCG00016894
TU20326 other downstream 128858 33176076 ~ 33178883 (-) True G16356
TU20188 other downstream 804489 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 808846 32497507 ~ 32498895 (-) False AMCG00016859
TU20184 other downstream 884303 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 2778241 30526292 ~ 30529500 (-) True G15787
TU20415 other upstream 107906 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 170143 33488725 ~ 33513579 (-) False AMCG00016891
TU20574 other upstream 788108 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4439575 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 4708901 38027483 ~ 38058939 (-) False AMCG00016959

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000069_03298533_03302831.mRNA True 1794 mRNA 0.48 12 CI01000069 3298197 ~ 3302831 (-)