RNA id: AMCG00016985


Basic Information

Item Value
RNA id AMCG00016985
length 3051
RNA type mRNA
GC content 0.37
exon number 5
gene id AMCG00016985
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 39790933 ~ 39797563 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTTGTTGAATGAGAACAGTGTGTGTCAGATGAAAACCGGCTGCGAACTGCGGTGTAGAGCGAAGTGAAAAGAGACAGGATTTAAGTTTTTGTGAAACTAGAGAGTAAGCATTTCCCTACGCGGACAATGTTAGGCTTAAGTGGTCTTTCGGTGGCCCTTGCGCTGGCACTAATACCGAGCAGTAGCGAGGCTTTGAAGGAGGGGGATTGTGaagTGTGCCTTAGCTTTTTTGAGAGGTTTTACCAATCTCTGAAAGATGATAAAGTGGATTTCACAAGTGCAGCTATAGAAAAGGCACTGGTTCGAACCTGCAAAGACGTAAAGGGCAAAGAGAACAGACTGTGTTACTACATTGGTGCAACAAGTGATGCAGCCACAAAAATCATAAATGAGGTCTCCAAGCCTTTGAGTCACCACGTGCCTGTGGAGAAAATCTGtgagaaactgaagaaaaaggACAGCCAGATTTGTGACTTAAAATATGATAAACAAGTGGACCTGAGCACGGTGGACCTGAAGAAGCTGAAGGTGAAGGACCTGAAGAAGATCCTGGAGGAGTGGGGCGAGACGTGTAAAGGCTGTGCTGAGAAGTCTGATTTTATCCGCAAAATCACTGAGCTCATGCCCAAGTATGCCCCCCAAGCTGCCCACGCACGGACAGATCTCTGATGGCCATGCCTCTAGAAGAGGGTGCAGGAGGGATGATTGGGGCACCGGGACCACCTATCACAGACTGTACATTGCTGTAGTTTCTCATTAAAGGGATAGgcttttttataatttattatgacAAGGGTATCTTCTATTTGAAACCAGGAGGGGAAAGACAAAAATATCAAAGAACTGGTTCCTCAGCCACACCTCTTTATTGTAAGACTTGTTACTcatgtacagattttttttttttttttttttttttttttaaattaaaaaaaaaaaaaaaaaaagCTGTCTTTGAGATGGATTATAACTGAAAAGCCAAGGTTCcttttgtgtatatgtatagcAGTAGTCAGTCTATTTTAAGAGTATTTTAAGATGAAATGCTGAATACTCCTGTCATTCTTTTTGTTCAGTTTCAACAGTCAAGGTTTCACCAGTGCTTTGTGAACATGTTTGCAGTGCTACTGTAATGCCAGCCCTATAGTGCACAGCATATGTATCTTACCCAGAATAAGCAGTCGATCTGTCATCATGAGGGGAAGTGTTTTGATGCTGGTTTGGAGTATGTACTGAATGGAGAGCATAGCATGATGGAATTAAGCTCTTATGTACCAGCAAATTAGAAGGCAATGAAACCCAACAAAAAGCACACTGCATGAACACAAGGAAAGCCTGGTGTAGGGCATTGTATACATATGTTTGGTCTGATCCTGTGGTATCAAAGTTTGAAgtaaatttgttttgcacagttgtgcagtaaaattaaaatgcatttttaggtGTTTCAATATTTAAACCTTTTGTGCACAGATGcatataaaaatgttctttgCTGGCCCTTTGGTAATCTTGTAAGAATTATAACTGACATATCCTGCAAGCTCTCATGTGGAGAAGGCAAGTGTGTGATCTCAGTTTACAGACATCCAGATTGGGAAGAGGAGTCTTAATATTTCATAGTAAAGTCAGTTCTCGCTTTGGCCTGTTGgctaatgtatttgttattccTGTGCATTGATTTTTGGTTTTGCCTTAATCAAAGTATATAAAATcccttttttggtttatttaatgagaTGAACAATGTATCTGGTCCATGAATTTCAAtttctttccaaaaacaaaaatctagcCATATAATCATCACCACTTCATTGGCAATACAAACCATCTTTCCTATGATATGGCAAGAGTTGGTTTCAAGTGATCTATGCACAACTTGGATGTATTATAATCGGGAACTTTTGTCCTTTGTGGTCAAGTCCTTAAAACACAGGGTCTCAATGTATTTTCCCCACTGCTTTTTTTACTGTGTagtttatcaaaaataaatggatttatAGACTTCAACAGGGTCACAAAAGTATTTTGCTGGTGATATAGCCTCATTTCAAACACATGGTTCAATCTACTGTGGTTAGGGGTTGAATGATGTCCAGTCCAATGTGTTTTAGAAGTTGGTTATAGAGAGGATTGTTAAAATCTTCCATGACTGAAATGGTGTGATCTAAACGCtatttaagaaaactaatttaaaatcgAATTGAAAGGAAATCGGTATGAGAGAGGTTTTGAGTTCTTGAAGAGTTTGCAGTTCATGAAATGTTTGTCATTCACAAATTCTCATACTTCATAGATTCAACAACCTTGCTGTCCGACAGGTGTTCAAGTTGAGTACTAGTATTGGAATGCACCATATTTTAATCAACTTTCCATGTATTGTATAGAACCTGCtaattaaaatagttataatCTATCATGCACTGAATGTTATGGTTGCCATGGATATCACGTTTTCTCCAGCAGCTTTGACATCATGGGTTTCCAAATGATACATCTCAATGAGGTGCAATTAAAGGAAATATACTAACTCGATTCTAATTttgatttgtatatatgttttgctgtttttccagCGCTGTGTATATCCGATGTTTTTCTTATATGTTTGCAGAGTATCTGTATTTGCACAAAAACTCTTGGAGAGTTCAGCTgcattaattcaaaatacaacgGGGAACGAATACAATTAAATAGTGTTAAAGTAACCGTAGGACATCTAAATAGTAAAAGTATAATCCCCTTTATTAAACGTTttttatgtgtaaaataaatgtggtcGGCTATGTAGGTGGTGCTTATGCAATATCAATTATTTGACAACGTAATAACTGACTAGATGTTGCTCATGCGATTCATTAGAAAGGACATTTAGTGTCGGACAAAATTAAACAtcgtaataataatcatgaatgCATCAATGCATTATTGCACAAAtaattcactttaaataaaccaatccaaaccaaaccaaaccaatgaACAAGTATTTCATGCATATACggcaaatacaattaaatatgaataaaacgAATGCAGATACAAC

Function

GO: NA

KEGG:

id description
K22556 MANF, ARMET; mesencephalic astrocyte-derived neurotrophic factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21543 lncRNA upstream 366 39790089 ~ 39790567 (+) True G17361
TU21437 lncRNA upstream 536443 39251500 ~ 39254490 (+) False AMCG00016979
TU21428 lncRNA upstream 711036 39079415 ~ 39079897 (+) True G17274
TU21363 lncRNA upstream 984987 38754521 ~ 38805946 (+) True G17230
TU21350 lncRNA upstream 1164910 38625526 ~ 38626023 (+) True G17221
TU21569 lncRNA downstream 470862 40268425 ~ 40284772 (+) False G17381
TU21571 lncRNA downstream 470862 40268425 ~ 40284772 (+) True G17381
TU21617 lncRNA downstream 1418932 41216495 ~ 41216809 (+) True G17419
TU21622 lncRNA downstream 1447739 41245302 ~ 41245519 (+) True G17424
TU21691 lncRNA downstream 1804385 41601948 ~ 41605391 (+) True G17482
AMCG00016984 mRNA upstream 2117 39669200 ~ 39788816 (+) True AMCG00016984
AMCG00016982 mRNA upstream 361644 39399757 ~ 39429289 (+) True AMCG00016982
AMCG00016983 mRNA upstream 394337 39375260 ~ 39396596 (+) True AMCG00016983
AMCG00016980 mRNA upstream 467812 39305280 ~ 39323121 (+) True AMCG00016980
AMCG00016981 mRNA upstream 496215 39271273 ~ 39294718 (+) True AMCG00016981
AMCG00016986 mRNA downstream 572 39798135 ~ 39800651 (+) True AMCG00016986
AMCG00016988 mRNA downstream 468378 40265941 ~ 40280387 (+) True AMCG00016988
AMCG00016989 mRNA downstream 646367 40443930 ~ 40460889 (+) True AMCG00016989
AMCG00016995 mRNA downstream 1605194 41402757 ~ 41426060 (+) True AMCG00016995
AMCG00016994 mRNA downstream 1636129 41433692 ~ 41446610 (+) True AMCG00016994
TU21320 other upstream 1287301 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 5690070 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 5743213 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 6118313 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 6933493 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 2593734 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 4328651 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 4857089 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 9605156 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 9915961 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU745553 True 1503 lncRNA 0.45 4 NC_048571.1 82773806 ~ 82778044 (-)