RNA id: AMCG00016989


Basic Information

Item Value
RNA id AMCG00016989
length 1854
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00016989
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 40443930 ~ 40460889 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAGTTCCAGGATGAATCTTTATATCGGGAAACACAGCTTTTTCATTGAACTGTCATGGATGAAGGCTCAACGATCAAAGGGGTGCATTTGAATGAAATCCCGGTGGCTTTGATAAGGCTTCTCCCCTCTGTTCTGCTGCTTTCGTTCACTTAACACGCATCCTGTGCTCGGTGTGTCCTGTGTCTTTAAAAACGCCAGGCATCGCCATGGATGCAGACAGGAAGCTGCGGACTGGAGGAAGCGTCGACATCCCCGTCCAGCCCCGCACACACTGCAGGAACATAAGGCCAGTCAAGGAGTGTGTAATTATGAGCGACAACACTGTAACATGCACAGTGAAGACACCAGTAGCGCTGCAGATTGGAGATGTGAAGACAGACTCCAGGCCAGGGATCTATGTAATTGATATAACCTTCCCCCCTGGCCAGACTATTAATATTCAAGAGATCTCCTTTAAGAACTATTATACTGCCTTCTTAATGGTGCGCCTCCTCAGACGAGATCCCAAGTCTTCAGAGAATGCTGTGAAGTGGGTTACCGGCCTGCAAAAGTACCATCTCATGCCAAAGCCTCACGCTGAGGGAGGCTCTCAGGACTACTTCTCTATCTATCGGCAGCAGATGCTGGTTGAACCTGATGACGTGACCTCGATACGGCTGATCTTGAGACAACCTTCCTCAGTATGGCTTAACTTCACTCTGGAGGACATCAAAATCCGTGAGTGTGGGAACGAGGATTCAGAGAAGAACTTGTCATCGTGGTTTTCCAGCTTTACACCAGTGGAACAGCCTCCCGATTTGAAAGaaGGCCTGCCTGATCCCCAGCAGGTGTCATCCAGCATCCAGCAAATGTGGGCGTTGACAGAAGTCATGCAGACCAATCAGAGTGCAGCACGAATAGGTCGCTTTGACgtGGACGGCTGCTATGACATCAACTTGCTTTCCTACACATAACCGGTAATGTGACAGAAGAGGAACTTTTCTCAAGCAAAACGAGTGCAAATGCTGCATATCAGTCAACCCCATGACAGATATAGTCCTGCTCCATTAACTAGCcatgcattcatttaaagtgTTTAGGTTGCAGCATTTGCATATTGCAACCTGCAGATCAACAGAAAATGATTGCTCATGAGGCAGAATCTGATTTTGAATCCTACAATCCGTAAAGttgtttaaatgcttttgaGTTCACCTGCCATTCCATGCTTTTTTGGTTACGCTGCCCGAAATTAGTGCAAccgtgtttttgtttcctttgcacTTCTTTTGCTCTTAAACTGAAACGATATTCATGCAACCTTTTAGCAAACTCCTTAGTGTGGATTTTTTTAACCTTCAAGTGTGTCTTAGGCAAAACAAATGGCGCTAGAAGTGTGTTGAAAGGTGCCAAGAGGATCCCGAATCATCAGTTGGCCAAAAAGGAACTTGCTTCCGTATGTATATGAACACTGAACTCATTTAAGAATGGCcactgagaaataaaatgtccatCATCATGGTCTACGACTTTGTTCTTGCTGTCTTCCATTCTTATTCCTGAATTTGTCCATGGCGAGTGCTAGGGGGTAAGAAAAGGGTAAGAGgctaaaagaaaatgtaggtCTGATAAAGCATATTCATCTGTAGCTTTGAAGACAAACTGTCATATCTAATCAAGTCTGCCAGGTGTTAATTCGGTACAATTATAGGATCCCTGAATGGATTAACATACCTCTAGTATTGCATCAAGAGTGCTGGTCTCCTCTTATTTGTTGATTATGACTTCTATTCAGTACATATCGAGCCAGATTATGTTCAGTTAAGTAATGCCTAAacctaaatgtttttgtgttcaaatgtaataaaggaag

Function

GO: NA

KEGG:

id description
K16607 NICN1; nicolin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21569 lncRNA upstream 159158 40268425 ~ 40284772 (+) False G17381
TU21571 lncRNA upstream 159158 40268425 ~ 40284772 (+) True G17381
TU21543 lncRNA upstream 653363 39790089 ~ 39790567 (+) True G17361
TU21437 lncRNA upstream 1189440 39251500 ~ 39254490 (+) False AMCG00016979
TU21428 lncRNA upstream 1364033 39079415 ~ 39079897 (+) True G17274
TU21617 lncRNA downstream 755606 41216495 ~ 41216809 (+) True G17419
TU21622 lncRNA downstream 784413 41245302 ~ 41245519 (+) True G17424
TU21691 lncRNA downstream 1141059 41601948 ~ 41605391 (+) True G17482
TU21710 lncRNA downstream 1210489 41671378 ~ 41673353 (+) True G17491
TU21717 lncRNA downstream 1227121 41688010 ~ 41690199 (+) True G17498
AMCG00016988 mRNA upstream 163543 40265941 ~ 40280387 (+) True AMCG00016988
AMCG00016986 mRNA upstream 643279 39798135 ~ 39800651 (+) True AMCG00016986
AMCG00016985 mRNA upstream 646367 39790933 ~ 39797563 (+) True AMCG00016985
AMCG00016984 mRNA upstream 655114 39669200 ~ 39788816 (+) True AMCG00016984
AMCG00016982 mRNA upstream 1014641 39399757 ~ 39429289 (+) True AMCG00016982
AMCG00016995 mRNA downstream 941868 41402757 ~ 41426060 (+) True AMCG00016995
AMCG00016994 mRNA downstream 972803 41433692 ~ 41446610 (+) True AMCG00016994
AMCG00016998 mRNA downstream 989366 41450255 ~ 41457202 (+) True AMCG00016998
AMCG00016997 mRNA downstream 997483 41458372 ~ 41464821 (+) True AMCG00016997
AMCG00016996 mRNA downstream 1015677 41476566 ~ 41496271 (+) True AMCG00016996
TU21320 other upstream 1940298 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 6343067 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 6396210 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 6771310 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 7586490 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 1930408 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 3665325 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 4193763 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 8941830 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 9252635 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile