RNA id: AMCG00017028


Basic Information

Item Value
RNA id AMCG00017028
length 5302
RNA type mRNA
GC content 0.51
exon number 27
gene id AMCG00017028
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42515426 ~ 42551765 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGAAGAAGAGTTGGAGGACAGGGACTTTATCCGCGATAAACACCTTCCAAAACCGGAGACTTCACCGGAGTGTCATCTGGAGGTTGTACGTGATGGGCCCAGGCTAGAAGTTTCTAGACATACCGTCGCCAAAATAGCCGGGCCAGGTAGAAAGCGCCACACCCCTGAGCCAGAACCCAGCAGCGAAGCCGGTGGGCAATACGTGAGTGCCAAGTGGCTCAAGATGGCCAGCACCGGCGAGGCCACCGGCCGCCGCAGACCAACCCGTGGGATAGAGGACAGCACCAGCAGGAAGAAGCAGAAAGACAAGGCCAACCAAGAAAGCAAGGAAGCCAAGCGGTCAGGTAGCACAGAAACCAAGAAAGACCTATCACAGTCTCTGGAGTCACACGATGATACAGAATTTGATGATGGGCGTCAGTGGAGCTGTGTCCTGCACACCGAGATTGAGAGCTCctgcagtaaagtgcagtacaAGGAGAAGGGCAACTTCCTGCAGCTGGTCATGCAGAAGAAGATCCCTTTCAACATCTGGCCGTCTCTGATGcgAAACAAGAAGGAAAAGGATCCCATTAACATTCAGACAGAGAATGGGAAAGAGCAGGCTGGGAAGTTGGAGAAACTGGAGGAAGAAGGGGTGAAGGCACCCGTAGAGTCAACTGAGCAGAAACGGGCAAAACCAGATCGGGGGATAAAACGTGCAATAAAGCCCAAACCAGCTGGAAAGACTGAGCGGGGCACAAAGGGTACAGAGACTTCAAAGCACAATTGGAAGGCAGAGTTACCAACTGAACCCAGTGCAAAACGTGTGATCCGCACTACGTCTAAAGCTGCTAAAGACACGGGGCATGGTACAGGGAGGGTCTCCCCCGCAAAAGGCATGGGAAGCACCAAAGTAGAGACTGGCCAGGATACAGTAGGTCCGCTCAGCTGCAACGGCAGGAGTACAGACCAGAAGAGTGTCCGAGGCTCTCCAGCGCCTGCGCCCCAGGCAGAGGTGGTAGAAGAAGGTAGAGGCCAGTCTTTGGTCACTGAAACCAGTGCAGGTGTTCAGACCCCCCCCCAGGACATGACTCCCCCCACAGAACCCTCCAGGAATGGCGAACCTCAGGAGTTGCACAGCACAGAAGGGACTGTCGAGCCCATAgttgagaaagagagacaatGCCAGGGAGAACTGGACTCTCAGGTCGAGAAAAACGTTCCTGAATTAGAGGTGGCTGGGTCTGGCCATTTTGGTACTGGGGAGCCTGCCTCACCAGCCCTCTCTAAAGAGGCCTCTCCTTGTGCAAAGGGTATGGAGGAAAAGAGTGATGAGACAAAAGAGGAGAGCTTGGAAATGCAGCCAGAAGTCTTGGAGCCCATGGTGAACTTGAAGTTTGTGAAGAACGACTCTTATGAGAAAGGGAACGACTTCATGGTGGTCAATGTGTACATGAAAGGGATCTGCAGGGAGAGCTCAAAGGTGCTGTTCAGGGAACAAGACTTCACACTCATCTTCCAGACCAGTGATGCAAATTTTCTGCAACTACAGTCGGGCTGTGGACCAAACACTGTCTTTAAATGGCAGGTCAAACTCAGGAACCTTATCCACCCTGACCAGAGCACCTATGCCTTCACCCCATCCCGGATCGACATCACTCTGAAGAAGAGGCACAGTCAGCGCTGGGGGGGCCTCGAGGCTCCAGCAACACAAGGTGCAGTGGGTGGCGCCAAGGTTGCTGTGCCCTCTGGGCTTGCTTCTCTAGATAAGAGCCAGCCTGGGAGTAGCCAGCATACCCTGCCCAACAAAGAGGAACCCAGGACgacagagaaggagaaggcACGCGGAGACGACGGTGGCCTGGACACGGTGGCAGCCAGAACAGTGTCTGAGCACATGCCTATTAAGCAAGAGCCCCTTGTCACCTCACCCAAGCCCACATGCATGGTGCCCCCGATGACCCATGCTTCTGCAGGCAGTGAGCACCccgatgaggaggaggagaagaaggtgTGTTTACCTGGCTTCACTGGCCTAGTCAACCTGGGCAACACCTGCTTCATGAACAGTGTCATCCAGTCTCTGTCCAACACCCGGGAGTTGAGGGACTACTTCCACGATCGAGGCTTTGAGTCTGAGATCAACTGCAATAACCCCCTGGGCACTGGCGGGCGCCTTGCCATTGGCTTTGCCGTATTGCTACGGGCACTGTGGAAAGGCACTCACCATGCCTTCCAGCCCTCCAAACTCAAGGCGATTGTGGCGAGCAAGGCCAGCCAATTCACAGGCTATGCGCAGCACGATGCCCAGGAGTTCATGGCTTTCTTATTGGACGGGCTTCACGAGGACCTGAACAGGATCCAGAACAAACCCTACACAGAGACTGTAGACTCGGATGGCAGGCAGGATGAGGTGGTGGCAGAGGAGGCCTGGCAGAGGCACAAGATGCGGAACGATTCCTTTGTTGTGGACCTGTTCCAGGGACAGTACAAATCCAAGCTGGTGTCTATAACATTTGACCCATTCCTGTACCTGCCAGTCCCATTGCCTCAGAAACAGAAGGTCCtaactgtgttttattttgctaagGAACCCCATAAGAAGCCAATCAAGTTCCTGGTGAGCGTCAGCAAGGAAAACTCCAGCACGACTGAAGTCTTGGAGTCCATTTCTAGGAGTGTACGAGTCAAACCGGAGAATCTGCGTCTCACTGAGGTCATTAAAAGTCGTTTTCACCGAATCTTCATGTCCTCGAGCTCGCTGGATGCCGTTTCACCCTCAAACACTCTCTTCTGTTTTGAAGTGCTGTCTAAGGAGCTTGCCAAGGAGAAAGTACTGGTGCTGCAGGTCCAACAGAGACCCCAGGTTCCCAGTGTGCCCATCGCTAAGTGTGCTGCCTGCCAGAAAGCACCTCAGTCAGAGGATGAGAAGGTGAAACGCTGCACTCGCTGCTACCGTGTGGGCTACTGCAACCCaACTTGTCAGAAGAATCATTGGGCTGATCACAAACATCTGTGCCGGCCGAACACGGAGAACATTGGCTACCCCTTCCTGATCAGCGTTACGGAGTCCCGGCTCACATACAGCCGGCTCTCACAGCTGCTGGAGGGCTACTCGAGCGATGACTCTGGCTTCTCCGAGCACAAGGCTGAGTCCCACGGTCCCTCAAGTGAGAAGGAGACATTCTGCGAGAAGGTGGTGAAGCCTGAAGCTGTAGTTACAGGCTATCAGCAGCCTAGTGAGTCCCAGGCCCGCTCTGCCTCACAGTTTTACATTGCTGTGCTCGACTCTGAAAACAAAGAGCAGAAGCTAGAGGACAAAGATGATGCGGTGCTGCAGATCGCTGAGGACTCCTCCATCATCCTGGTTTGGAAGAACAACGAGCGGCAGAAGGAGTACGTCCTGATCAAGTCCAAGGAGCTGGAGTCTGTGGAGGACCCAGGGTCAGTCAGCGAGGCTGCCAGGGCTGGGCACTTCACCCTAGAGCAGTGCCTCAACCTCTTCACCAAGCCAGAGGTGCTAGCCCCCGAGGAGGCCTGGTACTGTCCGAAGTGCAAGCAGCACAGGGAGGCATCCAAACAGCTGATGCTGTGGCGGCTGCCCAACGTGCTGATCATCCAGCTCAAGCGCTTCTCCTTTCGCAGCTTCATCTGGAGGGACAAGATCAATGATATGGTGGACTTCCCTGTCAGAAACCTGGACCTTAGTAAGTTCTGCATCGGGCAGAAGGATGACAGCCAGCCTCCCATCTATGATTTGTACGCTGTGATTAATCATTATGGGGGTATGATTGGAGGACATTACACTGCGTATGCCAGACTGCCCAATGACAAGAACAGCCAGCGCAGTGACGTCGGCTGGCGCCTGTTTGATGACAGCACAGTCACCACCGTGGAGGAGAGCCAGGTGGTGACACGCTATGCCTACGTCCTGTTCTACCGCCGCCAAAACTCCCCCGTAGAGAGACCCTCGCGAATGCCCAGCCCCCATGGCGCAGAGTCCCCGGCAGCTGCAGGAGCCACAGCCAGCCAGaccTCTAGCCAGGCACTGTTTGGGACAGATCTGGACCCTGAAGGACCCCCACAGCTGACCCCAGAAGTTAACTCTGATCTGTTCCCTCACTCTGGAGACTGCGACACCCCATCGTACAGCAACATGGAAGAAGTGGATTAAATTGGGCAGCCCCTCACTGGACACGAACTGTGGAGAGCCAACCACGATACTaggagatttttttaaagaattttaaGATGACTTACTGATTTAAGTGAGTTGACGGGACACGGTTTGCTGTCTGCCGATCATAGCATAAGGTGATGATGGGCATTTAGGTGCAcacttgacacacacacatctttcatTTTGTCAGCAGTGCCATCAGTCCGTTACACTGGtgagaagatgatgatgatgatgatgattaaaataCCCCCCTGATGGTGCTGCAGTCCTGCACTGGGCACCAAGTAGATCTGGATGAAGTATGGTTGCCTGTCTGGCCCCTCTGCATTGATGGACTCTCCAGGTGCATTGGATTCTCACTCCATCCCCTTCCTTCCCCACAGAGTAGGGTACTGCCGGTTCCCCCTCACcagttaaaaacacacacacgtgggGAGCTGCCTCTGTGCTGAAATGTCTGTCTTTTTAAGGGCTTCCCTTGCAGTGTCGACAGAGGGCATAGGCAGAATTGTCATATTGGATCCATATTGGCTCATTCAGTTGAGTTGAGGATGCTGAATGGTACAGCTGCAATTCTCAAAGCAAGGGTGACTGATGGATGCTGTATTTCGCAGTAGGAACCACAAAGACCTTTTCTGAAGTTGGATTTCTTTATGgttttttttttgtaatttacccCACACACGgtaaatttgtttatttttcttcaaccTGAGAAACTGATGTTCACTTCATATACAGTTGGGTCAGCCCTGTGTATACTCTTTTGCAGAACCTGATCTTAAACTCTTATCACTTAATCATCTGCATGGTAACACTGTAGCCCAAGTGtggaaaaagttaaaaaaaaaaaaaaaattgcttttataTTCTTTTCTTTACCTAGttaaggtttgttttgtttttctttcatttgtggGTGGAATGtctaagtattttatttcattcttgttttttgtattgccactgcatatatgtgtgtgtgtgtgggggacaTGGTTATATGGATGCTGCTGTGAATAAAGTATAAAtggttaatataaataaatccttttttgagaaactgaaaaaagttgTTTGTATACACAACAAAACTCTGATTCAGTTGtaactttaaataaagtttCCTGGA

Function

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K11847 USP19; ubiquitin carboxyl-terminal hydrolase 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21821 lncRNA upstream 536760 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 772653 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 798437 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 825227 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 842073 41671378 ~ 41673353 (+) True G17491
TU22180 lncRNA downstream 501321 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 684055 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 842528 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 918305 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 948405 43500170 ~ 43500476 (+) True G17987
AMCG00017029 mRNA upstream 5798 42477751 ~ 42509628 (+) True AMCG00017029
AMCG00017027 mRNA upstream 55567 42428197 ~ 42459859 (+) True AMCG00017027
AMCG00017026 mRNA upstream 138491 42352071 ~ 42376935 (+) True AMCG00017026
AMCG00017032 mRNA upstream 204219 42310053 ~ 42311207 (+) True AMCG00017032
AMCG00017033 mRNA upstream 224595 42289746 ~ 42290831 (+) True AMCG00017033
AMCG00017023 mRNA downstream 1454 42553219 ~ 42561656 (+) True AMCG00017023
AMCG00017037 mRNA downstream 30587 42582352 ~ 42594094 (+) True AMCG00017037
AMCG00017035 mRNA downstream 72224 42623989 ~ 42630671 (+) True AMCG00017035
AMCG00017034 mRNA downstream 98089 42649854 ~ 42664428 (+) True AMCG00017034
AMCG00017038 mRNA downstream 164184 42715949 ~ 42719266 (+) True AMCG00017038
TU21955 other upstream 117639 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 4011794 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 8414563 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 8467706 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 8842806 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 1574449 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 2102887 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 6850954 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 7161759 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 8000115 50551880 ~ 50552985 (+) True G19113

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044039 True 4437 mRNA 0.51 25 NC_007134.7 20149429 ~ 20175674 (-)
grasscarp (Ctenopharyngodon idella) CI01000001_06146900_06161111.mRNA True 4668 mRNA 0.50 24 CI01000001 6146563 ~ 6161111 (-)