RNA id: TU20321


Basic Information

Item Value
RNA id TU20321
length 201
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G16351
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33180239 ~ 33180439 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gctttctttttctttcccccctttGCTATTGCCCAACAAAGGACGAAAACAACCTCCCCGCCCGCCCCGTTCAATGCGCCATGAAGTCTTTTTCACTCAGGCTATAATGTAATCACGTTTAATGTAATGGCATGCACTCTGAAACTCAGTAAGGTCTATATACAGCCGGTCTTCTGCACCACTGTCAGTTTGAACTTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20320 lncRNA upstream 299 33179705 ~ 33179940 (+) True G16350
TU20283 lncRNA upstream 197909 32981779 ~ 32982330 (+) True G16323
TU20241 lncRNA upstream 321223 32857551 ~ 32859016 (+) True G16290
TU20144 lncRNA upstream 737654 32438254 ~ 32442585 (+) True G16211
TU20094 lncRNA upstream 917567 32261711 ~ 32262672 (+) True G16169
TU20374 lncRNA downstream 144655 33325094 ~ 33328342 (+) True G16395
TU20376 lncRNA downstream 148358 33328797 ~ 33333746 (+) True AMCG00016880
TU20498 lncRNA downstream 466049 33646488 ~ 33648455 (+) False AMCG00016898
TU20509 lncRNA downstream 470642 33651081 ~ 33651289 (+) True G16512
TU20546 lncRNA downstream 812743 33993182 ~ 33995382 (+) True G16542
AMCG00016885 mRNA upstream 2307 33176271 ~ 33177932 (+) True AMCG00016885
AMCG00016874 mRNA upstream 28622 33148491 ~ 33151617 (+) True AMCG00016874
AMCG00016875 mRNA upstream 70672 33035302 ~ 33109567 (+) True AMCG00016875
AMCG00016873 mRNA upstream 158369 33012918 ~ 33021870 (+) True AMCG00016873
AMCG00016872 mRNA upstream 190281 32986580 ~ 32989958 (+) True AMCG00016872
AMCG00016886 mRNA downstream 27033 33207472 ~ 33221284 (+) True AMCG00016886
AMCG00016881 mRNA downstream 41095 33221534 ~ 33244483 (+) True AMCG00016881
AMCG00016883 mRNA downstream 75786 33256225 ~ 33292591 (+) True AMCG00016883
AMCG00016882 mRNA downstream 112614 33293053 ~ 33301913 (+) True AMCG00016882
AMCG00016880 mRNA downstream 139705 33320144 ~ 33329563 (+) False AMCG00016880
TU20240 other upstream 322799 32856361 ~ 32857440 (+) True G16289
TU20166 other upstream 676983 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other upstream 676983 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other upstream 676983 32500796 ~ 32503256 (+) False AMCG00016854
TU19916 other upstream 1445923 31728556 ~ 31734316 (+) False AMCG00016830
TU20517 other downstream 488190 33668629 ~ 33672620 (+) True AMCG00016901
TU20550 other downstream 866932 34047371 ~ 34047720 (+) True G16546
TU20555 other downstream 919876 34100315 ~ 34100863 (+) True G16550
TU21320 other downstream 5315612 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 9210858 42391297 ~ 42397787 (+) True G17697

Expression Profile