RNA id: TU21619


Basic Information

Item Value
RNA id TU21619
length 581
RNA type TUCP
GC content 0.40
exon number 1
gene id G17421
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41216651 ~ 41217231 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtagatcacgtgaaagcatatgatatgatatacttagatttccaaaaagcttttgataaggttccacaccaaagactgatcctcaaattggaagctgtaggcattcagggtaatgtaagtagatggattatgaaccggttgatgtataggaaacagagggtgtcgattagaggagtcacttctaactggagtgaggttgttagtggagttccacagggatcagtactagggcctttgctttttctaatctatattaatgatctggactctgggatagttagcaaacttgtcaaatttgcagatgatactaaaataggtggctcagcagatacaatcttggcagcacaagctattcagagggacttagataatattcagttgggggctgacacctggcaaatgaaattcaatgtgaacaagtgcaaggtaatacatgcaggtaacaaaaatgtccactataattacactatgggaggtacagatctagatgaagtaacgcatgagaaagacctaggagtctacgtggactcctcactttctccatccaagcaatgtggggaagcaataaaaaaggcaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21612 lncRNA downstream 338586 40873372 ~ 40878065 (-) True G17414
TU21574 lncRNA downstream 931828 40280538 ~ 40284823 (-) True G17384
TU21573 lncRNA downstream 950390 40264597 ~ 40266261 (-) True G17383
TU21548 lncRNA downstream 1415811 39794975 ~ 39800840 (-) True G17364
TU21500 lncRNA downstream 1819796 39394493 ~ 39396855 (-) True G17325
TU21621 lncRNA upstream 27695 41244926 ~ 41245225 (-) True G17423
TU21724 lncRNA upstream 384693 41601924 ~ 41605395 (-) True G17505
TU21787 lncRNA upstream 719695 41936926 ~ 41938534 (-) True AMCG00017014
TU22026 lncRNA upstream 1327129 42544360 ~ 42549418 (-) True G17755
TU22024 lncRNA upstream 1333094 42550325 ~ 42551773 (-) True G17754
AMCG00016993 mRNA downstream 108490 41106691 ~ 41108161 (-) True AMCG00016993
AMCG00016991 mRNA downstream 177977 41037352 ~ 41038674 (-) True AMCG00016991
AMCG00016990 mRNA downstream 225991 40989266 ~ 40990660 (-) True AMCG00016990
AMCG00016992 mRNA downstream 328071 40888359 ~ 40888580 (-) True AMCG00016992
AMCG00016987 mRNA downstream 1361537 39827240 ~ 39855114 (-) True AMCG00016987
AMCG00016999 mRNA upstream 311425 41528656 ~ 41530149 (-) True AMCG00016999
AMCG00017002 mRNA upstream 369892 41587123 ~ 41596403 (-) True AMCG00017002
AMCG00017001 mRNA upstream 388184 41605415 ~ 41609900 (-) True AMCG00017001
AMCG00017004 mRNA upstream 456524 41673755 ~ 41702096 (-) True AMCG00017004
AMCG00017007 mRNA upstream 496580 41713811 ~ 41733567 (-) True AMCG00017007
TU21144 other downstream 3157712 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 3157712 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 3458180 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 7108710 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 7703072 33488725 ~ 33513579 (-) False AMCG00016891
TU22128 other upstream 1591480 42808711 ~ 42864616 (-) True G17842
TU23267 other upstream 7271896 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 10213624 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 10228356 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 10228356 51445587 ~ 51449786 (-) False G19335

Expression Profile