RNA id: AMCG00017565


Basic Information

Item Value
RNA id AMCG00017565
length 1632
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00017565
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11955414 ~ 11973684 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGATTACGGGTTCGGCTTGTTACAGACAGCCAACATTAACAGCAGCTCCGCGGGCTTTGCAGGAAGCGCTTTCAGGTCGTACGCGACGTCCCCCCCGGCTGCCAGCGGCCAGCTCTCCTCCCTCAGCCCCGGCAGCGGCGCCGCCACCGTGTCCTCTCTGTTCCTGTCAGCGGCTGCGCACCATCAAAACATGCAGGATGAGCTTCTTCTGGGGGTGACCACGTCCACGTCCACGTCcacgcagcagcagcagtcccCGTCCGCCGACAAGACCCACAGCAACAACATCCTCAACAAGACCGGCCACCACCaagccaacaacaacaacaaccccgACTTCGGCAACCACAAGAGACTGGACTACAACCACctgaaccagaaccagaaccagcaTCAGCTGTCCGATTTCAAGCCGGGTGTCAATCAGGACACGTTCGGGCCGCCGCAGCAGATCGGTGACCTTCAGCAAGAGCggaaaaagcagcagcagcagcagcaggctgaTTTCGGCAACAAACAGCACCCTCCCCCgccacctcctcctccaccaccgcagcagcagcagcagcagtaccCGCCCCTGAACCGTGCGCTGCAGGGACCGCCCGAATCCGACCCGGGTGCCGAGCCGAACCCCGTCCACATCCACCCCGGAGCGGACGACACTGCGGCTGCGGAAGCCAATGCGGTGGCCGCTGCGTCGCCGTCGCCCTCTTCCGTGAATCCCAACAAGGTTAGGCTCCAGATGGACTCCCCCAACACCCACCTGCTCAACAACGGCAATGGCAGCAACCCCGGGAACATGCTGCCAGGAGGGCTCGGTGCCGGATTCACGAACCTCCAGAACCAAGAGCTGCCGAACCCCCAGCAGAACCCGGGGGGCTCCGCGTCCCCGTCTTTGCCCGGGTTCGGGACCCCCTGGTCGGTGCAGACTAGCTCCCCCCCACCGCCAGTGACCAACTGTAGCAACCCAAGTCATGCCAACCCCATGAATCAGATTCCCAACACCGACCCCGACAACAGTTTCTACCCCGGGATCCCTTCCTCCATCAACCCGGCCTTTTTCCAGAGTTTCTCGCCGGTGTCGGCTAATCCCTGCGCTGGGATTAACGTGCCGGGCTTCAACAGCCCTTTCTCCCCCCAGATTAATGTACCTCAACAGCAGCAGAACAGGAGGTCCCCGGTCAGCCCCCAGTTGCACCACCAACACCAGGGCGCATTTCTACAACAGAGGAACAACTACAACCACCACCAGCCCATCATGAAGCAGTCCCCCTGGAGCAGCCATCAGGGCAGCGGCTGGAGCTCTGGAGGGATGTCCTGGGGGGGCATCCACGGCCGAGACCACCGCAGGCCTGGCGGGATGGGGATCCCAGGCACCATGAACCAGATCTCGCCCATGAAGAAGCCCTTCTCCAGCAATGTCATTGCACCTCCCAAGTTCCCCCGGTCCGCAGCCTCACTGACGCCGAAATCCTGGATCGAAGACAATGTGTTTCGCACagacagcaacagcaacacCCTCTTACCACTGCAGGATCGTTCTAGAATGTATGACAGCTTGAACATGCACTCCCTGGAAAACTCACTTATTGATATAATGAGAGCTGAACACGATCCTTTGAAG

Function

GO: NA

KEGG:

id description
ko04510 Focal adhesion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114103 lncRNA downstream 76077 11877360 ~ 11879337 (-) False AMCG00017569
TU114096 lncRNA downstream 121516 11831433 ~ 11833898 (-) True G91467
TU114095 lncRNA downstream 125721 11828008 ~ 11829693 (-) True G91466
TU114018 lncRNA downstream 448609 11504294 ~ 11506805 (-) False AMCG00017563
TU113996 lncRNA downstream 557683 11397520 ~ 11397731 (-) True G91381
TU114186 lncRNA upstream 337352 12311036 ~ 12311604 (-) False AMCG00017582
TU114187 lncRNA upstream 367758 12341442 ~ 12341735 (-) True G91539
TU114204 lncRNA upstream 522607 12496291 ~ 12499947 (-) True G91553
TU114209 lncRNA upstream 532943 12506627 ~ 12509143 (-) True G91556
TU114221 lncRNA upstream 543396 12517080 ~ 12521214 (-) True G91562
AMCG00017568 mRNA downstream 16881 11933251 ~ 11938533 (-) True AMCG00017568
AMCG00017567 mRNA downstream 48020 11904838 ~ 11907394 (-) True AMCG00017567
AMCG00017569 mRNA downstream 54814 11878880 ~ 11900600 (-) True AMCG00017569
AMCG00017574 mRNA downstream 103800 11843481 ~ 11851614 (-) True AMCG00017574
AMCG00017573 mRNA downstream 144758 11802643 ~ 11810656 (-) True AMCG00017573
AMCG00017579 mRNA upstream 118786 12092470 ~ 12097269 (-) True AMCG00017579
AMCG00017582 mRNA upstream 334097 12307781 ~ 12322370 (-) True AMCG00017582
AMCG00017587 mRNA upstream 690847 12664531 ~ 12665835 (-) True AMCG00017587
AMCG00017589 mRNA upstream 697424 12671108 ~ 12677683 (-) True AMCG00017589
AMCG00017591 mRNA upstream 708742 12682426 ~ 12688515 (-) True AMCG00017591
TU113928 other downstream 1458310 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 3199507 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 3440459 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 3958819 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 4122822 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 2459474 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 3893263 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 4056718 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 4056772 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 5494921 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile