RNA id: AMCG00017568


Basic Information

Item Value
RNA id AMCG00017568
length 903
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00017568
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11933251 ~ 11938533 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTTCCTCTCTGTTCCCCATCGATGACGGCCTCCTGGATGACGGACACAGTGATCAGGTTGTCCCCGGGGTCCTCAACTCGCCCAACTGCTACTCCCACCAGAATGGCGAGCGCATCGAGCGTTTCTCCCGCAAGGTGTTTGTCGGTGGGCTGCCCCCGGATATTGATGAAgATGAAATCACTACAAGCTTTCGTCGCTTTGGACATCTGGTTGTGGATTGGCCTCACAAGGCAGAAAGCAAATCTTATTTTCCACCCAAAGGTTATGCATTCCTGCTGTTCCAAGAGGAAAGCTCAGTCCAGGCTTTGATTGACGCCTGCCTGGAGGAAGATGGGAAactttatctgtgtgtgtcaagTCCTACAATCAAGGACAAAccagTCCAGATCCGACCCTGGAATCTCAGCGACAGTGACTTTGTGATGGACGGCTCACAGCCACTAGACCCCCGGAAAACTATTTTTGTAGGAGGAGTTCCTCGTCCCCTAAGAGCAGTGGAGCTGGCTATGATAATGGATCGTCTCTACGGTGGCGTTTGCTATGCGGGAATCGATACTGACCCTGAGCTGAAGTACCCCAAAGGTGCAGGGCGGGTGGCCTTCTCTAATCAGCAGAGCTACATTGCAGCCATCAGCGCCCGCTTTGTCCAGCTCCAGCACGGAGATATTGATAAACGGGTGGAGGTGAAGCCATACGTGTTGGATGACCAGATGTGTGATGAATGCCAGGGAGCCCGCTGTGGGGGGAAGTTTGCCCCTTTCTTCTGTGCCAATGTCACCTGCCTGCAGTATTACTGTGAGTTTTGCTGGGCAAACATACACTCTCGTGCGGGGCGCGAGTTTCACAAACCATTAGTGAAGGAAGGGGCGGACCGTCCACGTCAGATTCACTTCCGCTGGAAC

Function

GO: NA

KEGG:

id description
K02602 CPEB, ORB; cytoplasmic polyadenylation element-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114103 lncRNA downstream 53914 11877360 ~ 11879337 (-) False AMCG00017569
TU114096 lncRNA downstream 99353 11831433 ~ 11833898 (-) True G91467
TU114095 lncRNA downstream 103558 11828008 ~ 11829693 (-) True G91466
TU114018 lncRNA downstream 426446 11504294 ~ 11506805 (-) False AMCG00017563
TU113996 lncRNA downstream 535520 11397520 ~ 11397731 (-) True G91381
TU114186 lncRNA upstream 372503 12311036 ~ 12311604 (-) False AMCG00017582
TU114187 lncRNA upstream 402909 12341442 ~ 12341735 (-) True G91539
TU114204 lncRNA upstream 557758 12496291 ~ 12499947 (-) True G91553
TU114209 lncRNA upstream 568094 12506627 ~ 12509143 (-) True G91556
TU114221 lncRNA upstream 578547 12517080 ~ 12521214 (-) True G91562
AMCG00017567 mRNA downstream 25857 11904838 ~ 11907394 (-) True AMCG00017567
AMCG00017569 mRNA downstream 32651 11878880 ~ 11900600 (-) True AMCG00017569
AMCG00017574 mRNA downstream 81637 11843481 ~ 11851614 (-) True AMCG00017574
AMCG00017573 mRNA downstream 122595 11802643 ~ 11810656 (-) True AMCG00017573
AMCG00017564 mRNA downstream 137179 11785640 ~ 11796072 (-) True AMCG00017564
AMCG00017565 mRNA upstream 16881 11955414 ~ 11973684 (-) True AMCG00017565
AMCG00017579 mRNA upstream 153937 12092470 ~ 12097269 (-) True AMCG00017579
AMCG00017582 mRNA upstream 369248 12307781 ~ 12322370 (-) True AMCG00017582
AMCG00017587 mRNA upstream 725998 12664531 ~ 12665835 (-) True AMCG00017587
AMCG00017589 mRNA upstream 732575 12671108 ~ 12677683 (-) True AMCG00017589
TU113928 other downstream 1436147 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 3177344 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 3418296 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 3936656 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 4100659 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 2494625 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 3928414 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 4091869 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 4091923 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 5530072 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015347 False 2827 mRNA 0.48 10 NC_007125.7 24099372 ~ 24111292 (-)