RNA id: AMCG00017924


Basic Information

Item Value
RNA id AMCG00017924
length 1321
RNA type mRNA
GC content 0.62
exon number 8
gene id AMCG00017924
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29031879 ~ 29049397 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATCAGGCGCTGGAAGGACAGCATAGTATTTACTTCCGTGCGCAAGGCCCCGTCGGCAGGTCTGCGGCGTGTGAAGCGGCGGAGCTGCATagaggggcggcCCGGGGAGGGGGTCAGTCGCCGGCGCTGCTCTCGAGGCTGTATAGGCTTTTCTCTGCGCTCACGAGACCACTCGGGAGAGGCCACGGCTCTTCCCGTCCGTATcgacacacctctctctctcgggaTCCGTCGCTGGAGGATAGGAACGCCGTCGCTTGGGTCGGAGAGTTCAGGTTTCTGTCTCGCCTCGCCCTCAGGATGTCAGGCAAGAACCCCCCTCTGAACCGGCTGGAGCAGCGGGCCACCGAGGCCGACCAGATCATCGAGTATCTGAAGCAGCAGGTCCAGCTGCTGAAGGAGAAAGCCATTTTACAGGCCTCCATCCGGGAGGAGAAGAAGCTCCGAGTGGAAAACGCGAAGCTGAAGAAGGACATCGAGGACCTGAAACAGCAGCTGCTCGACAAGGAGAAGAGAAAAGGAGTGAAACCGGTCGCAGTCCCCTCTGCGGACGCCGCCACGCCGTCCACGTCGCAGCCCCCTGACCCCGAGCCAATCCGATCCGTTGCTCCGTCCGCCGCCGTCAATAAGGACAAAGCGCAGAGGGACGGCgaggacaagaagaagaaggacaAGCTGGAGAAGAAGGCCGGAGAGAAGAAGAAGCAGCCGGGGGGCGGGGAGGAAGAGGCCCGGACGGTGGACGTGTCCCGCCTGGACCTGCGCGTCGGCCGGATCGTGACGGCCAAGAAGCACCCGGACGCCGACGCCCTGTACGTGGAGGAGGTGGACGTGGGCGAGGCGGCACCCAGGACAGTGGTCAGCGGGCTGGTGAAGCACGTGCCCCTGGAGCAGATGCAAAATCGGATGGCGGTGCTCCTTTGCAACCTGAAGCCGGCCAAGATGAGGGGCGTCCTCTCCCAGGCCATGGTCATGTGTGCCAGCTCCCCGGACAAAGTGGAGATCCTCGACCCACCCAGCGGAGCGCAGCCCGGGGACAGGATCTCCTTCGAGGGCTTCCCAGGTGAACCCGACAAGGAGCTGAACCCCAAGAAGAAGGTGTGGGAGCAGGTGCAGCCAGACCTGCGCACTGACACGCAGTGCGTGGCCACGTACAAGGGGGCTCCTTTCGAGGTCCGGGGCAAGGGGGTCTGCAAGGCTCAGACCATGAGCTCGAGCGGGATCAAATAAGAGCCGGTCTGGATGAACCCCCGAAAGCCCAGCTGACACGAGGAAAAAGAAATGGGAGCACGAGCGCAATAAAAGGTTTTGAAATTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0000049 tRNA binding molecular_function
GO:0004825 methionine-tRNA ligase activity molecular_function

KEGG:

id description
K15437 AIMP1, ARC1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117425 lncRNA downstream 296135 28733824 ~ 28735744 (-) True G94137
TU117354 lncRNA downstream 606636 28425032 ~ 28425243 (-) True G94074
TU117353 lncRNA downstream 611617 28419916 ~ 28420262 (-) True G94073
TU117336 lncRNA downstream 934721 28093468 ~ 28097158 (-) True G94060
TU117308 lncRNA downstream 1192089 27838251 ~ 27839790 (-) False AMCG00017902
TU117522 lncRNA upstream 158073 29207470 ~ 29207804 (-) True G94218
TU117556 lncRNA upstream 236810 29286207 ~ 29286747 (-) True G94246
TU117670 lncRNA upstream 862585 29911982 ~ 29914837 (-) True G94337
TU117708 lncRNA upstream 946852 29996249 ~ 29997513 (-) True G94358
TU117710 lncRNA upstream 948957 29998354 ~ 30002282 (-) False G94359
AMCG00017918 mRNA downstream 179727 28846378 ~ 28852152 (-) True AMCG00017918
AMCG00017917 mRNA downstream 190243 28814981 ~ 28841636 (-) True AMCG00017917
AMCG00017916 mRNA downstream 333360 28694548 ~ 28698519 (-) True AMCG00017916
AMCG00017911 mRNA downstream 367184 28649941 ~ 28664695 (-) True AMCG00017911
AMCG00017909 mRNA downstream 462224 28568960 ~ 28569655 (-) True AMCG00017909
AMCG00017925 mRNA upstream 29612 29079009 ~ 29091940 (-) True AMCG00017925
AMCG00017926 mRNA upstream 51111 29100508 ~ 29117642 (-) True AMCG00017926
AMCG00017928 mRNA upstream 209108 29258505 ~ 29263533 (-) True AMCG00017928
AMCG00017929 mRNA upstream 219884 29269281 ~ 29272932 (-) True AMCG00017929
AMCG00017930 mRNA upstream 223654 29273051 ~ 29273284 (-) True AMCG00017930
TU117465 other downstream 155956 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 887290 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 2921805 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 2924074 26104026 ~ 26107805 (-) True G93795
TU116981 other downstream 3016387 26012661 ~ 26015492 (-) False AMCG00017866
TU117547 other upstream 219838 29269235 ~ 29273168 (-) True G94238
TU117930 other upstream 1578591 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 3213379 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 3222297 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 3244623 32294020 ~ 32295433 (-) False AMCG00018007

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001080 True 1187 mRNA 0.52 7 NC_007112.7 50293938 ~ 50319654 (+)
grasscarp (Ctenopharyngodon idella) TU478177 True 895 lncRNA 0.50 4 CI01000301 399897 ~ 412270 (-)