RNA id: TU113887



Basic Information


Item Value
RNA id TU113887
length 456
RNA type TUCP
GC content 0.48
exon number 2
gene id G91281
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9519773 ~ 9583280 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGTCAGAATTTGGCgtaaacagaatgagaacatggatccatcatgccttgttaccactgtgcaggctggtggtggtggtgtaatggtgtgggggatgttttcttggcacactttaggtcccttagtgccaattgggcatcgtttaaatgccacggcctacctgagcattgtttctgaccatgtccatccctttatgaccaccatgtacccatcctctgatggctacttccagcaggataatgcaccatgtcacaaaggtcgaatcatttcaaattggtttcttgaacacgacaatgagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctatcctatcaacacacacacacacacactt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113726 lncRNA upstream 678735 8838647 ~ 8841038 (+) True G91151
TU113705 lncRNA upstream 694936 8819713 ~ 8824837 (+) True G91135
TU113695 lncRNA upstream 735684 8783867 ~ 8784089 (+) True G91128
TU113664 lncRNA upstream 787141 8732368 ~ 8732632 (+) True G91104
TU113524 lncRNA upstream 1233045 8286292 ~ 8286728 (+) True G91004
TU113913 lncRNA downstream 583250 10166530 ~ 10166747 (+) True G91307
TU113916 lncRNA downstream 714122 10297402 ~ 10297808 (+) True G91310
TU113936 lncRNA downstream 984898 10568178 ~ 10568428 (+) True G91329
TU113942 lncRNA downstream 1156823 10740103 ~ 10764336 (+) False G91334
TU113941 lncRNA downstream 1180560 10763840 ~ 10764336 (+) True G91334
AMCG00017551 mRNA upstream 147578 9257206 ~ 9372195 (+) True AMCG00017551
AMCG00017545 mRNA upstream 372434 9127763 ~ 9147339 (+) True AMCG00017545
AMCG00017544 mRNA upstream 416570 9086577 ~ 9103203 (+) True AMCG00017544
AMCG00017543 mRNA upstream 498731 9017879 ~ 9021042 (+) True AMCG00017543
AMCG00017538 mRNA upstream 550295 8869114 ~ 8969478 (+) True AMCG00017538
AMCG00017553 mRNA downstream 47121 9630401 ~ 9668976 (+) True AMCG00017553
AMCG00017552 mRNA downstream 309948 9893228 ~ 9895433 (+) True AMCG00017552
AMCG00017560 mRNA downstream 1806909 11390189 ~ 11402671 (+) True AMCG00017560
AMCG00017561 mRNA downstream 1924596 11507876 ~ 11525014 (+) True AMCG00017561
AMCG00017562 mRNA downstream 2283885 11867165 ~ 11879473 (+) True AMCG00017562
TU113671 other upstream 765992 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 830367 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 1386919 8132368 ~ 8132854 (+) True G90955
TU113388 other upstream 1826426 7692585 ~ 7693347 (+) True G90881
TU113384 other upstream 1847923 7668183 ~ 7671850 (+) True G90877
TU114078 other downstream 2296334 11879614 ~ 11880499 (+) True G91452
TU114568 other downstream 4453596 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 5494045 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 5529330 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 6283751 15867031 ~ 15867634 (+) True G92123

Expression Profile