RNA id: TU116050


Basic Information

Item Value
RNA id TU116050
length 3170
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G93024
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 22686424 ~ 22689677 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNAAATATATGGTTATTAAGTAGAGATTATCCGTGTGCTTTAGTCAGACAAATTCACCAGGCATTTACCAGTTGGACATAGGACACAGGGCATGATAAATATTGAGAGGACAATAAATGTAGAATAAATCACTAAACAGAACACAATTTAGTGCAAAAATATGAGCAAGTCGTTTTCCAAGACTTTGGTAATGTAGAACACCCTTTAAGAAGtacaacaaatgacaaaaaaaacagccatctcattaaaatgaaacgattggattacatttttttttttacatgatcACAGCCAATCTCAGCAGTACTTGATGGTAAATTACTCCTTATGATACAGACTTGCTTAGCATGAAATTACAGTAAGTGATGTCCTATTTGAAGACTAATGATAATTTCCTTGaaggaatttaatatttttgacaACATTAAAACTAGGGAtgcaatatgtatttgtaaatggaTCAGTTAATTGTCATATTAGTGctttttacattattgttaCAGTGctctacaattaaaataaatctaataaaatcaaataatgaatttaaCTACTAGAACTGTCAAATAAATGTGCTCTTTATCGGTGATAGAACTGAGtagccgttttttttttttaagggtatTCACTatgagaaaatgaataatttcaaataaagttCTGAATGAATGTATTACAGGCAGACAAGTATTTTGTCAACTGAGAAAACagtacagcatatatatatatatatatatatatataatgtttctactgttttaattttgtgaacAATTATACTTAGCACACTTTATGGaaaccacagaaaaacacaaacccttAGTGTTTCTTATGTTGTAAATCTTAATCAGTCATTTATTTGTTGGCAAACAAGTTTCACTTTTACAACAAATATTAGTTATGAGGTCATTCAACTCGGAAAccatacaaaatgaataaataatagtcataatcataataatcataataataataataataataaaaaactataacCTGTGCTGCTAAATTCTTTACCACCTGAAatccaatattattttttattcattttttattttttatcaaataaataaatagctttcttgttaagaaaaaaataaaataaaaaatcagacAGTTCCAGTTTACTCACTCCAAAAAGTTCTTTTTTAATAAGtgtaacatttccatttttctaCAATTGCCTAGTGCTTATCCATCAAGCGTTTCTCTTCCTGACATGCACAGGCTCTGTCTATCGAAATGAAGACCTCTTGATGTCTTGGGAGTACAAGCCTCTCAAAGGACTGATTGCTGCTCAGTTTATTCTATAGTACTTTTAAGCTAGCTTTCTGcttaattttcaaaatgatttgccATTACTTCCACTGTTCATgaaatatttcataaaaaaaaaaaatctacagtgaagaaaaattaactcaaaatggttttgaaaacaTCAGTGATTACTAAGCTAGAAAATGATCTTCATAAAGTGTTTTGTTCAGTGGATATGTAGTTCATAGgaaaaatgagaaagaaaattaaaaattgctCCTACTGGTAGAATAAACCCGCAAGACCAgcacaacagaaagaaaatgctcTAATCACTACATTTACAGAGACAAAAGTTTTGGAGGAACAGAAAAAGCATACTATTATGTGCAATGCTAGTATCTGtacagttacatagaaatttcTTATAATCCTCtgtcattagtttttttttcttttaataactgGAATTATTacagcaaaaacataaaatatgctCTCTCTAGCATATATATTAAAGAGTTCCCTCATGGTTTTGttcaaaaacattgttttgcttAACTCACAGGATCATCACAGCAAAAGGTGCTGCAATTCACCATGTAggaagaaatttaaaaaagccaGTATGGATACAGaagtataataaaatagtttttttttgtgtgtgtttgtttgttcttttattgtttgtttgttttctttaaacacTCAGCTATTGGCGGACAGTTTAGGGCCTTGTTTGTAATTCCTTTGGGATGTCAAAATGCTAGTACGCATTACAGGTGAGATCCAGAATGATGTTCCTTGTTTAAACCCTTGAACACTATGAATCTGTTCAAGGAATAGTTTTCTTCTTAACTCAGATACAGATTTCCTTGGCCATTCTACAAGTctagacttttgtttttcagtactTGAATGGCATCAAAAATTGAAGAACACAGAGAAAAATGTTTACCACTGCTTATAGTTGATCAGAACAAGAAACCATGGGAAAGAATTGTCATCTATAGGCTTGTGACCAAGTGGGAAGGTTCTTGAGAGGTTTCTTCGGGAGATGCATCTTCCTTATTGGGAGGAACTATAAATCCATCACTACTGCCTCGCCCCAGCTGGTAGTAAGTGTGAAGTTGATGCACATGGTTCCTTGAACCCAGGTTCGGCATACTTTTATAATAAACATCATCCACATCACTGGTTTTACTTGTTGGAGGCTCACTCTGGGCCTTAGTGCCATTGGTTTCCGTGGTAGGCATACCAGTGAGGACTGGCATGCTGGTATAAAGGGAATCTCTGTGTGGCGACTGCGTGTCTTCTGTATGCTCGTTGGTTAACAAGGGGAAAAAACTCTCGCTGTTCTCCTGTGGGATCCGTCGCCTAACAAAGTGGTGAGGCTGATGGTTTTCAGTGGACTGAGCCCTTTGTGGAAGTAAGGGGGCATTGGATTCCTCCCGGATGAGCTCGAGGCCCAAACTCTCCTCGTGGTTGAATGAGGTGGCATCATCCAAAACAATGGCATCATCTTTGTTGCTGTTGCCAACGTTGTTCACCAGCTTGTTCATGaggtttctgttctgttcactGGAGCGCTCATGGTTGTTCAGGTAGGAAGGGATATAATTGGAGGTGAGTTCCTTCAGGATCTTTTTTTCTAGTGCTGTCTCGGTGTGGTTGTAGCCACGGTCTATGATTTGGACACAGTCACTCATGTACTCACCACTGGCAATGCTATAGCTGTTGCCATGGTTACCATTCAGTGGTAGAGTATCCATGACACTTGTATCCCTGGCATTGTTCAGAATTCCCTCTGAAAGACAGGAAACATAgtgtataaatagtaaatatattGTGAACAGCTGCCTTTTGTTACTGTAACAGTTGTCCCAACACTTTTAGGACATATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115974 lncRNA downstream 411447 22272981 ~ 22274977 (-) True G92972
TU115955 lncRNA downstream 465644 22220521 ~ 22220780 (-) True G92955
TU115953 lncRNA downstream 533846 22152372 ~ 22152578 (-) True G92953
TU115945 lncRNA downstream 561682 22044980 ~ 22124742 (-) True G92947
TU115948 lncRNA downstream 593019 22092965 ~ 22093405 (-) True G92948
TU116052 lncRNA upstream 998 22690675 ~ 22691532 (-) True G93026
TU116057 lncRNA upstream 88127 22777804 ~ 22778099 (-) True G93028
TU116062 lncRNA upstream 111694 22801371 ~ 22804384 (-) True G93033
TU116067 lncRNA upstream 149474 22839151 ~ 22839434 (-) True G93038
TU116128 lncRNA upstream 600655 23290332 ~ 23290681 (-) True G93090
AMCG00017763 mRNA downstream 320377 22309249 ~ 22366047 (-) True AMCG00017763
AMCG00017757 mRNA downstream 1283164 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017758 mRNA downstream 1316935 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017759 mRNA downstream 1382301 21296047 ~ 21304123 (-) True AMCG00017759
AMCG00017753 mRNA downstream 1549864 21129357 ~ 21136560 (-) True AMCG00017753
AMCG00017776 mRNA upstream 479896 23169573 ~ 23194544 (-) True AMCG00017776
AMCG00017777 mRNA upstream 574357 23264034 ~ 23279042 (-) True AMCG00017777
AMCG00017782 mRNA upstream 607011 23296688 ~ 23313459 (-) True AMCG00017782
AMCG00017780 mRNA upstream 628416 23318093 ~ 23321930 (-) False AMCG00017780
AMCG00017781 mRNA upstream 641267 23330944 ~ 23345917 (-) True AMCG00017781
TU115494 other downstream 3267068 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 3267068 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 4223248 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 5212085 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 6655519 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 628449 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 628449 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 628449 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 3322984 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 3322984 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066987 True 6291 processed_transcript 0.44 12 NC_007118.7 73023727 ~ 73088964 (+)
grasscarp (Ctenopharyngodon idella) CI01000352_01385835_01391158.mRNA True 2137 mRNA 0.49 4 CI01000352 1385232 ~ 1391321 (-)