RNA id: AMCG00018396


Basic Information

Item Value
RNA id AMCG00018396
length 3070
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00018396
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9960221 ~ 9968405 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGAAAGGGCGGGCTAGAATCGTCAGCCAATGAGCAAGGGGGATGGGCGGGCTCTTGTATTTGGGCTCCACCCACTTCCTGGTGTCCTGCTGGAGTCAGTCGTGATGCGACGCTGTGGAGGATTGTCAGCAAATCCGAAAGTCTAACCCTTGGTATTGGCCCTGTTTGGGAGGCCTAACTGGCGGCTGTGGATGAGTTCCCGGGCCAGGACGCACGATACCTCGGGAAAACCCGCTCGGGGCAGCAGGAGAGCGGGCAGGATGAAGGCCCTGTCCAGGTTCGGGGTCCACCCGGACGCCCTGGCCTACTCCATGACCACTCTGGGCGCCGGGATGATGAACAGCATCTTCAGCTTCTATTACGTGAAGCTCTTCTTAAACAAGTACAAGATCTCTGAAGCCGCCTTCCATCAGTCGCAGGTGATCTACATGATCTGGAACGCAGTGAACGACCCCCTGTTTGGCTACCTCCAGGACAACTCGAGTGTGCCGTGCTGCTCGCGCCGCAGGCTGGCCATCCTGTACGGGGCGCCCTTCTACGCCCTGTCCTTCCTGCTTGCCTGGTTCCCATGGCGGGCGTACGCGGCAGGCGACTGGCTGAGCGGCGTGCATTTGCTGGTTGCGCTGTGTGCCTTTGACGGCATGCTGACCTTTGTGCTGCTATCCCAGTGCGCCCTGTTCGCCGAGATGTCCTCCGAGCACCACAGCCGCCTCAAGCTCATCAAGTACAGCCAGGTGGCATCGCTGGTGGGCTCTTCCAGCGTGCTGGTCTGTGGCCTGGCGTCGGGGAACATGGACGATTTCCCGGCCTTCCAAGCGGTCACGGTGCTGGTGGCGCTGCTGGCGTGCGGGTGCATGCTCTACACCGGCCTGCACAGCCAGAGCCGCTACGAGGCACGGCAGGGGAGCAAGGCCGAGCAAGAGGCACCGCAGGGGAGCTCCTCTAGCCCTCCTGGCCTCTCCCTGACCTCCATCTGCTCCATGACATGGCAGATCCTGACCCAGAGGGACTTCCAGCGCTTCGTGACCATGAACTTCTTCCAGGTCTTCATGGTGGCCTTTTGCAACAACTTCACCATGATCTTCACAGAGCACCTGGTGCCCAGAGACGCCCTCCCCCCCCTGGCCAAGAGTCTGATGTATGGGGCCGGGTTCATCTGCCCACAGATGGTGGTGTTGGGCAGTCAGAGGCTGCTGCGGACAGTGGGATACTACCGGCTCATCCTGCTCACCTTCTACCTGGAGGTGGGGGCTGCGGGGGTCATGCTGCTGCTGGGCCCACAGCACTACTACATCCTGGCTCTGTTCCTCACCACCAACATGGTCCTGGTCCAGGCCGCTTTCAGCCTGTTCAACCTGCCCCTGGCCGACATCATCGACGCTGACCTGCAGAGCAACAAGCGCAGCTCCCCGCTGTCCTCCATGGTCTTTGGCACCAATGCTCTCTTCACCAAGCCTGCCCAGTCCCTGGCACCCATGCTCATTGTCAACACCCTCAACCAGTTTGGCTACGAGACACTGAAGGATGTAGGAGCTGCTGCAGACCTCAGttcTCTGCAGGCTCTCCACAGCACCATGTTCTACCTGGTCTGCCTGGTACCCATGTGTGTGGCCGCCATGCAGATTGCAGCCTGGACTCCCTTCTCCATCAGAGACAGCCACACAGTAGACGCCAAGTACATCGAGACCTAGAGACGGCGAGGCCTGGAGCGCTGGACAGGCCGTGGTGGGTGGAGATGCCCTTCGAGCCGTGCTGGCCAGCGCTGGTCCTGGAGAGTTGCAGTGTCCAGTCTCTGTAAACCCCAGATCTGCGGATGCTGTGCACGTTGTAATCAGGACTGATCCAACGCATCCAATCAATCAAGCCATTAgttgtttgaattaaaaaatctaTCAAAAGCAGAAGACACTGTGGTTCTCCAGGACCTGGGTTGGCCAGCCCTGCTTTAAAGCAAATTACCTCTAGATTATTTTATACTTACAACTTTTTTTATtcggtttgtttttctacattttcttttaggtgtgtgtgggtgatGTTTATTGGTACAAATCATGGAGAATGAGTAACAAGGGAGCTTTAAAAAACTGTTCCTCTGAAGGTGGGGAAACCCAGAGCTCCGCAGTGAGAACCATGCAGGGTTGTTTCTCTGGTACCGTGCTCACCCATCAGCTGAAGGGATGTGTGACCATGTGGAAATTGTTATGGGATCAATGGGTCAAAGGTTACTGTCTGTTACTGGTGTACATCTCTGGTTTTATAATTTCTCATATGGGAAATGTTGAATTGCAAAATTTTAGCCAATTTGCAGTTGAAGTAGAGGCACTTAAGAGCTCTGTAGatactgtggctctccaggagtGGCATTGTTTGCCCCCTCATGTACACGGGAGTCCTGCTCGTTCTCCTGATAGTGGCGCTCCCGTCTCCAGGCTGGCTCTTTTGGCCAGGATCCTGCCATTCTCCTGATCCTGCCTGATCCTCTTTCCTCGTTGCTGTTGAACCTAAACTGAAGTCATCTTTTCCTTCAATTAAGCTTTTTGTCCCCAGCTCCTGTGAAGTCCTTCATATGGTTTTGCTGCCAATTAAACAACTCTGTAATGTATGAAGAGTTTTTAAAGGCCCACTACAGAACAACGTCACTTATGCTCCGGTCACATGACTATATCGGACCAGTAGAGGGCAATGTCAGCAGGGCCTGTCTGCAGCTGTCCTGTGTTTAAtacagggggggggggcaactgCCAAACACTTGGAAGTTGTGAAAGTAGCTCCTGGACAAGAAGACTAGATTTTGATTGTCAAATCTTTAAAACCCAACACTGATAGCCCTGGGACAGCAGAGGCTGCTACCTGTAAGTATCCAGAACCTGGAAGCTGCCGACCACAACTATGGTTTCAGAGTCACTACTCCATGTGAGGGGTGTGTACTAGGTGTTGGGAAATCATCACTTGTACCTGTATCTGAAGAAGAGTgcgtgttgtttttgtttagtttttccatTTCCGTGCAGCATTGAACTGAacttctgaatatatatatttttttgtaaataaaattttAGAAGCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145390 lncRNA upstream 212834 9689765 ~ 9747387 (+) True G116088
TU145317 lncRNA upstream 341316 9618670 ~ 9618905 (+) True G116035
TU145316 lncRNA upstream 346440 9612982 ~ 9613781 (+) True G116034
TU145305 lncRNA upstream 381124 9578837 ~ 9579097 (+) True G116028
TU145304 lncRNA upstream 382621 9577396 ~ 9577600 (+) True G116027
TU145520 lncRNA downstream 35868 10004273 ~ 10012673 (+) False AMCG00018405
TU145529 lncRNA downstream 64148 10032553 ~ 10041833 (+) True G116199
TU145543 lncRNA downstream 76047 10044452 ~ 10046143 (+) False AMCG00018406
TU145548 lncRNA downstream 151772 10120177 ~ 10121558 (+) True G116214
TU145613 lncRNA downstream 246982 10215387 ~ 10216789 (+) True G116264
AMCG00018397 mRNA upstream 16920 9926956 ~ 9943301 (+) True AMCG00018397
AMCG00018401 mRNA upstream 34275 9899962 ~ 9925946 (+) True AMCG00018401
AMCG00018400 mRNA upstream 64794 9882358 ~ 9895427 (+) True AMCG00018400
AMCG00018398 mRNA upstream 79530 9846901 ~ 9880691 (+) True AMCG00018398
AMCG00018399 mRNA upstream 126677 9825486 ~ 9833544 (+) True AMCG00018399
AMCG00018405 mRNA downstream 37694 10006099 ~ 10012595 (+) True AMCG00018405
AMCG00018407 mRNA downstream 47541 10015946 ~ 10025490 (+) True AMCG00018407
AMCG00018406 mRNA downstream 76062 10044467 ~ 10046523 (+) True AMCG00018406
AMCG00018415 mRNA downstream 121017 10089422 ~ 10094644 (+) True AMCG00018415
AMCG00018412 mRNA downstream 132519 10100924 ~ 10120054 (+) True AMCG00018412
TU145312 other upstream 347303 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 395817 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 718406 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 758635 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 1265502 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 1997842 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2547398 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3284938 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3339493 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 4051523 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050706 True 1735 mRNA 0.50 6 NC_007114.7 58455428 ~ 58468835 (+)