RNA id: TCONS_00050706


Basic Information

Item Value
RNA id TCONS_00050706
length 1735
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_025831
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58455428 ~ 58468835 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTGCAGTGCCTTGTATTTGGATGAGGTGAAATTGAACTCTGTTGTGGATATACACTCAACTGAAAAACATGTATTCTGTTCATGCTTTCTGATATAATCAATGGAATTAACTAATATGGATCACATATCAGCGACTGCACGAGTTTTATAATAGCGTctctttgtattattattattattagtattattattcagCTCTGACAGACATCTCATCAATCTCAGCATCATGAGAAACTTTGCTCATCCCGCCGCTTTGGCTTATTGCATGACGACGCTCGGTGCAGGCATGATGAACAGCATTTTCAGTTTCTACTATGTGAAGCTGTTCTTGAATAAGTACAGGATATCAGAGGCGGCTTTCCACCTGTCACAGGTGGTCTATATGATCTGGAATGCTCTGAATGATCCTCTGTTTGGATATTTGCAAGACAACTCTCGGATGGAGTGCTGCTCCCGGCGCAGGCTCTCTATCTTATACGGAGCCCCTCTGTACTGCCTGTCCTTCCTGCTTGCCTGGTTCCCCTGGAGGACGTACGAGACCGAAGACTGGCTGAGCGGCGTCCACCTCATGGTGACCCTCTGTGCTTTCGACGGCATGCTCACATTCGTGCTGCTGGCCCAGTGCGCTCTGTTCGCAGAGATCTCTGGAAACCACCACAACCGGCTAAGGCTCATCAAGTACAGCCAGTTGGCGTCTCTGGTGGGATCCTCCAGTGTGCTGTTCTGCGGCCTCCTCTCAAAAAACATGGAGGATTTCGCATCCTTCCAGGCCTTCAGCGTGCTGGTGGCTGTAGTGGCATGCGTCTGCATGCTGTACACGGGCCTCCACAGTGAGAGCCGTTTCGACAGCAAGAGCTCGGCCGATGACGCGCAGAGTCCGCCACTCTCACTGGCATCTGTGCTGTCCATGACCTGGCAGATCCTGACCAACAGAGACTTCCAGGTCTTTGTCTTCATGAACTTCTTCCAGGTCTTCATGGTGGCGTTCTGCAACAACTTCACCATGATCTTTGCAGAGCAACTCATTCCTCAGGACGTCCTGCCGTCACTTGCCAAGAGCATCATGTATGGAGCCGGATTCATCTGTCCGCAGATATTGGTGTTGTGCAGTCAGGATCTCCTGCGTAAGTTCGGCTACTTCAGACTGATCCTGATCTCCTTCTGTGTGGAGGCCGGAGCCGCGCTCATCATGCTACTGCTCGGCCCACACAACTACTACTTCCTCGCATTGTTCCTCACTTCCAACATGGTGCTGGTTCAGGCCGCCTTCAGTCTCTTCAATTTGCCTCTGGCAGACATCATTGACTCCGACCTACAGAAATACAAACGCAGCTCTCCTCTCTCCTCAATGGTTTTCGGGACCAATGCTCTCTTCACGAAGCCGGCTCAATCTCTGGCTCCAATGCTGGTGGTGTCCGTCCTCAACCAGTACGGATATGCAGAGATAAAGGATGCGGGGAAGAATGTAGATTCAGCTGCTCTGCGCAGCTGTATgtttctgcttgtgtgtgtggtgCCGCTGTGTGTGGCGCTGCTGCAGGTGTTGGTCTGGAGGCTCTTCTCTATACGAGACAGTCACACACTGGACGCCAAGTACACCGATGGATGATTGCAGATGTttatttcgtgtgtgtgtgtgtgtgtgtgcttctgtaaaggtacattttgattgTCAGAATGTACTGCAGTGAGAGGGTGTTTCTAGATAAAAAATGATTCAGGGATTTCTCATT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000074129

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052389 lncRNA upstream 26304 58425000 ~ 58429124 (+) True XLOC_025830
TCONS_00050702 lncRNA upstream 101841 58344862 ~ 58353587 (+) True XLOC_025827
TCONS_00052822 lncRNA upstream 149550 58300242 ~ 58305878 (+) False XLOC_025826
TCONS_00052823 lncRNA upstream 149550 58300254 ~ 58305878 (+) True XLOC_025826
TCONS_00052821 lncRNA upstream 152065 58300038 ~ 58303363 (+) False XLOC_025826
TCONS_00050707 lncRNA downstream 1100 58469935 ~ 58470519 (+) True XLOC_025832
TCONS_00052824 lncRNA downstream 85595 58554430 ~ 58595650 (+) True XLOC_025834
TCONS_00052825 lncRNA downstream 111754 58580589 ~ 58615939 (+) True XLOC_025835
TCONS_00052826 lncRNA downstream 119369 58588204 ~ 58624381 (+) True XLOC_025836
TCONS_00052827 lncRNA downstream 185689 58654524 ~ 58680069 (+) False XLOC_025837
TCONS_00050704 mRNA upstream 38460 58379450 ~ 58416968 (+) False XLOC_025829
TCONS_00050705 mRNA upstream 38561 58382572 ~ 58416867 (+) True XLOC_025829
TCONS_00050703 mRNA upstream 82777 58354852 ~ 58372651 (+) True XLOC_025828
TCONS_00050701 mRNA upstream 162932 58231560 ~ 58292496 (+) True XLOC_025825
TCONS_00050698 mRNA upstream 270398 58167303 ~ 58185030 (+) False XLOC_025821
TCONS_00050708 mRNA downstream 3470 58472305 ~ 58487848 (+) True XLOC_025833
TCONS_00050710 mRNA downstream 186540 58655375 ~ 58659343 (+) True XLOC_025838
TCONS_00050711 mRNA downstream 187477 58656312 ~ 58656994 (+) True XLOC_025839
TCONS_00050712 mRNA downstream 195107 58663942 ~ 58665324 (+) True XLOC_025840
TCONS_00050718 mRNA downstream 364471 58833306 ~ 58835177 (+) True XLOC_025849
TCONS_00050699 other upstream 285014 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 456869 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 625509 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 815980 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2971781 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050717 other downstream 233485 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000112_02096880_02108616.mRNA True 2069 mRNA 0.48 8 CI01000112 2096566 ~ 2108616 (-)
bowfin (Amia calva) AMCG00018396 True 3070 mRNA 0.54 7 CM030135.1 9960221 ~ 9968405 (+)