RNA id: TCONS_00050708


Basic Information

Item Value
RNA id TCONS_00050708
length 5235
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_025833
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58472305 ~ 58487848 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGTGCTGCGCGTTCCGGTCGCCATGTTTAGCCGGATTCACTCAGTTAAACAGAGGAACTGCCTTGTCCTGCTGTCGCCTGTACTTTTACTCTTTTATAGGATTTTAGACcagattcatttttaaaatagccgTGCCTTTGGAAACATGTTGCGGCAGTGAAGGGACGCGCTATTCCTCTGTTATGGACCCTCATGACCAGGCTGACGTCATGCACCTTCAGGACTCTCGTTCCTCAGCTCTGGATCTGTCGGTGGGCTGCAGGCATACAAACCCAATAGAGGCTCTGGATCTGGTGAAGAAGCCTAGCTGGTGTGGCCTTACCTCAGGAAGCAGGAGTGTCAACCTGTCAGAGTCCTGCTACATCGAACAGACTCCACCCCATCGTCCCGAGCCAGGAGAGACACCAGCCCATGACTCCTACTCCATCCCCTTACCCCTAATCAATGGCATGCCCTCTGTGGCACAGATACTGTCCCAGTGCTCATCCACAGACCAAGAGTTTACAGATTGTCATGAGGAAatggaggaagaagaggaggaggaggtgttgaTGCAAACTAAACAGTGTCACAAGAACGCAGAGTCTGTGCTGGAAAACAGCATTCTAGGAGGTAGGATAGCGCACGTCGTATTAGAGAAACATCCACAAGACATTGGGAGTGACACAGTTTTTTCTAAGGGCTCGTCATTTTTACCTCAGGACTCCAGTGCTGCTGCGAACACACTTCACTCCACCAGCTCAGCAGCAGAGCAGACCGCCATCGAAACCCTCGCATCCGAATGTACAAAAACATCTACCGAGAGCACCTCCAGTGATGCCGACAGTGACATCATTGAGGTTCCAGTAAGCAACTCTAGATGCACAACCCGCCCAAACTTGCGTCCCCGACCAACAAGTGTTATAGTCAGCGATACAAGCGGCCGGACGCTCAGAAGTTCCCGCTTAAAGCAGCAGGTTGATGCTGATCATCAAATGAACTTCTCTCCCAAAAATGTGAACAGCGTCTACACTATGGATGAAGCCGTTTTTGAAACCGCCAACCATAGGGTTGGCTCCGAATCCAAATCGCTGCTGTCTTGGATGGAGTCAGTGTTGATCCCCATTTCCCCGGAAGACAGCGAACAAGACACCAATTCTTCTTTCCCTAAAAACTTCCCATCTACCTCCGATGCAGAAAACTCAAGCATCTTAAGGTCTCCAGAGAATCGGAGATCATCATCTTCAACGCCAAGCCATCAAGAAAGGACTCCACCTTCGAAAAGCAGGAAACGGGCAAAACCAAGGCCCAAACCGAGACCCAAACCAAGACCTAAACCCAAGAAACAGCCGAAGAGAGCGGCGCCAGGCCCCAAAACGACGAAGAAAAGACGACGGAGGAAACCTCAGCCATCAGGACCGTCATCCATGTTTTCTCCTAAAGAGCCGGAGATCAAACTAAAATTTGCAAATCACAAAAGCGAGAAGAAAGAGGTTCGGACTGCCGTTCACTGCTTCGTGCCGTACATTCGTATGGAGTTCTCGTCCTGCACAATTGTCAATTTTAGGGAGGAGGAGGTGGCCTCAAAGAAAGGCTCCCAGCTTGCAGACTCAGGGGTCATCCCAAAGACATCCTGTCTACAGCTGGGTCGCATTGGCTCTGACGCCAGGCTTCAGGAAACGCGTTTTTGCTGCCTGTGTGGAAGTACTGGGAATGTTGAGGGTCTTGGGGATTTACATGGACCGTACCATCGCAGTGGAGCTCACCCCGTCTGTAAGGTTGACAGCAGCCTTCCTCTGGCCTTAAAACAAGAGCCCGACTGCAGCGACGTGGACTCGTTGGACAGTTTAGAGGACGGTGGGTCTCAAGTCAAACGACGGAGGAAGGAGAACGGCTGCGAGAGTCTGGAGGAGTCTGGTGCGCCTGGGGAGCACTGGATACATGAGGACTGTAGCATCTGGACGGCAGGCGTCTTTTTGGTTAAAGGGAAACTCTACGGACTGGAGGAAGCAATCCGGCTCGCGCAAGAATCAGTTTGCTCGTTCTGCAACAGGGTTGGTGCCACTTTGGGATGTTTCTTCAAAGATTGCCCTCAAAAATACCACTTCCCTTGTGCCGTGCAGTCAGGCAGTGCTCTCAACGAGGAGAACTTCACCATGAGATGCCCCAAGCACAAGAATAAAGTGTCCAGAATGAGCGTCAGCAGACTGAAGAACAGATGACGTTTGGCAGGAGTTGAGATATCTTTGAAGGCAGACTTCACCAGACATGGGTTTATCCGGCTGTGGAGCAGACGCCTGATGTGTTTACAGCTGATTTTTGTACTTCACATGTACGTATGAGTGTTTACACGTGCTCTCAGGCAGATAGATGAATGTTGGGACTGGATGTGCTGTTTTGAGACGccgctggctttttttttttcatctggcaCTACAGCGGTACCCTCGGATGATTGATGCTGGATGATCTTCATTACATTCCTCAGTGTTAAAAGCactcacagttttttttaaccatcAACTCTCTTGCATTGACTCTAGGCCAAACATCTCCATCTTTAGACTGAAGCACCTTTGGTCATGTCTACACAACAGTGACGTCATTAATAATACCCTCGAATCATCTGAAGAAGCAGGAtgtgctttattttttaattttctcctTTATTTATAGTCCTGAAGAAGAGCTTCAGATGATTAGTGCTGTTAGACATGCTGTCCAATCTAAATCAGTGCTGTCCTCATCACATAAAACTGAAATGCTGAGTGAACTCCGGTGGTACCGTATGCACTAATGAGTGagcatatttatttctatttatgttTAATGCATATGCGTCTATTTATTTGCCAATGAACAGCCTCCTTCAAAGAGACAAGAGTGTGTTTTAGCACCTTGTGTGTCCGCATTAAAGGAGCCGTTGTGATTTAATGTCGTCGGTAACAGCTACAGGGTGCTTTGAATATGAATTTCCGTCGATTCGTTTAAAACGCGTGGCCTGAATCAAGCAGTCGCAGTGTCTGTAGGGTTTCCCCATTTCACCTGATGCCTTGTGAAGTCTCCAGTTCTGtttcaataaatgtttttattctacatTCCTACCATTGTGTGCGACGCTCCCTTCTTTTGGCATTGATGTGTTGATGCACTGTTTGTCCTGGAGGTGGTGCTGAACAACCTTAATGTGTTGATGTCTGTTTTACAGCTGATGAATCTTATTCACAGGCAGCCACTGCTTATTACTAAATCAGACTGATGGGTTTAGGAAGTTTGAACCTTTTCATCATAGAAAACATTACAGTGGTTTCcacaaataattttaaatcaGCTGCATAACCTGAGCTCTCATATATACTGTAGTgttgaaaatgtgcatatttgAGTTTAATACAGACACTATTGAAGttctaaataaatgaattcaaggTTTTCCTGTGTGGAGGTTCTTCTCTTGTatctaataaaagaaaacaaatcaaaaagcatttttaatcattttaggtTGTTTTGCTGACACCACTGGcagattttgcttgttttaaggacaaaaactgtaattaaatttttttctggcacattttgcttgttttaaggacagaaaaaaagtaatttgttgtcctttaaacaaactaaatctaCCAGAAAAGGGTTAGAATTACagtttttgtccttaaaacaagcaaaattatgttttttttagtcTTCAAAACAAGCACAATctgccaggaaaaaaaaaagttagaatcaGTTTTTGtcttcaaaacaagcaaaatctgCTAGAAAAAAAAGGTtagaattacatttttatttgtccttaaaacaagcaaaataacagtttttgcttgttttaaggacaacAATTGTAATTCTAACCCTTTTCTGGAAGATTTTGCTTGAAGCAAAAACTAATTCTAACCTTTTTTTGTCAGattttgctttttttctagcAGATTTTGCGCAAAAAAagtaattttgcttgttttcaggacaaaaactttaattttaacttttttttgcagattttgcttCATTTAAGGACAAAAACTGTAATTCTAATTTTTTTTCTGGcagattttgcttgttttaaggacagaaaaaaacattttttttgtccttaaaacaacCTAAATCTACCAGAAAAGGGTTAGAATTACagtttttgtccttaaaacaagcaaaattatgtttttttagtcTTTGAAATAAGCACAATctgccaggaaaaaaaaaaagtcagaatcaGTTTTTGTCTTCAAAATCTGCTAGAAAAAAGGTtagaattacagtttttttttgtccttaaaacaagcaaaataatcgtttttgcttgttttaaggacaacAATTGTAATACTAACCCTTTTCTGGaagattttgcttgttttaaagcaaaaactaattctaacgttttttgtcagattttgcttttttttctagcAGATTTTGCGCAAAAAAagtaatttagcttgttttcaggacaaaaactttaattttaactttttttttttttttttgcagattttgcttAATTTAAGGACAAAAACTGTTATTCTAATTTTTTTTCTGGcagattttgcttgttttaaggacagaaatttttttattttttgtctttaaaacaaccTAAATCTACCAGAAAAGGGTTAGAATGACcgtttttgtccttaaaacaagcaaaattatgtttttttagtcTTCAAAACAAGCGCAATCTGCcagggaaaaaaaaattgaatcagTTTTTGtcttcaaaacaagcaaaatctgctagaaaaaaaaaggttagaattacagtttttttttttttttgtccttaaaacaagcataataaccgtttttgcttgttttaaggaattaCTTGTTTTAACTGTAATTCTAACCCTTTTCTGGAAGATTTTGCCTGTTTTGaagaaaaaactaattctaaccttttttgtcagattttgcacaaaaaaactattttgcttcTTTTCAGGACAAActttaattttaactttttttttgcagattttgcttAATGTAAGGACAAAAACTGTAAATCTAACCTTTTTCTAACAAATTTTGCgcaaaaaaaactgattttgcttgttttaaggacaaaaactGTAATTCTAACCTTTTCTGGcagattttgcttgtttaaaggacaaaaacatttatttctatttctgtttaatgcatATGCGTCTATTTAGCACCTTGTGTGTCCGCATTAAAGAAGCCGTTGTGATTTAATGTCGTCGTTTACAGC

Function

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-601 Predicted to enable metal ion binding activity. Predicted to be involved in circadian regulation of gene expression and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000154122

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050707 lncRNA upstream 1786 58469935 ~ 58470519 (+) True XLOC_025832
TCONS_00052389 lncRNA upstream 43181 58425000 ~ 58429124 (+) True XLOC_025830
TCONS_00050702 lncRNA upstream 118718 58344862 ~ 58353587 (+) True XLOC_025827
TCONS_00052822 lncRNA upstream 166427 58300242 ~ 58305878 (+) False XLOC_025826
TCONS_00052823 lncRNA upstream 166427 58300254 ~ 58305878 (+) True XLOC_025826
TCONS_00052824 lncRNA downstream 66582 58554430 ~ 58595650 (+) True XLOC_025834
TCONS_00052825 lncRNA downstream 92741 58580589 ~ 58615939 (+) True XLOC_025835
TCONS_00052826 lncRNA downstream 100356 58588204 ~ 58624381 (+) True XLOC_025836
TCONS_00052827 lncRNA downstream 166676 58654524 ~ 58680069 (+) False XLOC_025837
TCONS_00050709 lncRNA downstream 166750 58654598 ~ 58680069 (+) False XLOC_025837
TCONS_00050706 mRNA upstream 3470 58455428 ~ 58468835 (+) True XLOC_025831
TCONS_00050704 mRNA upstream 55337 58379450 ~ 58416968 (+) False XLOC_025829
TCONS_00050705 mRNA upstream 55438 58382572 ~ 58416867 (+) True XLOC_025829
TCONS_00050703 mRNA upstream 99654 58354852 ~ 58372651 (+) True XLOC_025828
TCONS_00050701 mRNA upstream 179809 58231560 ~ 58292496 (+) True XLOC_025825
TCONS_00050710 mRNA downstream 167527 58655375 ~ 58659343 (+) True XLOC_025838
TCONS_00050711 mRNA downstream 168464 58656312 ~ 58656994 (+) True XLOC_025839
TCONS_00050712 mRNA downstream 176094 58663942 ~ 58665324 (+) True XLOC_025840
TCONS_00050718 mRNA downstream 345458 58833306 ~ 58835177 (+) True XLOC_025849
TCONS_00050721 mRNA downstream 496615 58984463 ~ 58989816 (+) True XLOC_025852
TCONS_00050699 other upstream 301891 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 473746 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 642386 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 832857 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2988658 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050717 other downstream 214472 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000112_02087239_02090806.mRNA True 2659 mRNA 0.46 4 CI01000112 2086709 ~ 2090806 (-)