RNA id: CI01000112_02096880_02108616.mRNA


Basic Information

Item Value
RNA id CI01000112_02096880_02108616.mRNA
length 2069
RNA type mRNA
GC content 0.48
exon number 8
gene id CI01000112_02096880_02108616
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2096566 ~ 2108616 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCCTCATCATTGCGATCAAAGTCCTCCTCTACTATCACGTCCGTCAGCATCTCGACTCCAAACAAAGCTTTAAACCGACTGGAAGCGCCCGTTTAGTTTATTTTCCCGTTAAATTTAAGGCATCAGCGCCCTTTGTCAGATGGATAGACGCCGCAACGTGGCAGACTCAGCGCTGCTGGAGTGAAGACGCGATAACAACAAGAACGAATCTTCTCGCTGACCAATCAGAGGACGAGGGCGGGGACTTGGTAGAGTCTTGTGACGGTTTACTGGTGGATGGATATGCGTACAAGCCACGCCCACTTCGGAATACCAGGAAGTGCACGTCAAACATCCGTCTTCGCAGCATCATGAGACACTTTGCTCATCCAGCTGCTTTTGCTTACTCCATGACAACGCTTGGTGCTGCCATGATGAACAGCGTTTTTAGTTTCTACTATGTTAAGTTATTCTTGAATAGGTACAGAATATCAGAGACAGCCTTTCACCAGTCGCAGGTTGTCTATATGATCTGGAATGCACTCAATGACCCCTTGTTTGGATATTTGCAAGACAACTCACGCATGGAGTGTTGCTCACGGCGGAGGCTCTCCATTTTATATGGAGCCCCCCTATACTGTCTGTCTTTCTTGCTGGCGTGGTTCCCGTGGAGGGCGTATGAAGCGGACGACTGGCTGAGTGGCGTCCACCTCATGGTGACCCTCTGTGCGTTTGATGGCATGCTCACATTCGTGCTGTTAGCCCAGTGCGCCCTCTTCGCAGAGATCTCTGGACACCATCAGAACAGACTGAGGCTGATCAAATACAGTCAGGTGGCATCTCTGGTGGGCTCGTCTAGCGTGCTGTTCAGCGGTCTCATCTCCGCAAACATGGACAACTTTGCTGCCTTCCAGGGCTTCAGCGTGGTGGTGGCCGTGTTGGCCTGCGCCTGCATGTTGTACACGGGCTTCCACAGCGAGAGTCGATTTGACAGTAAAACCTCTGAGGAAGGTTCCTCAGAAGGTTCTCAGAAGCAGCCGCTATCAGTGTCGTCTGTGATGTCCATGACCTGGCAGATCCTTACCAACAGAGACTTCCAACTCTTTGTCATCATGAACTTTTTCCAGGTTTTCTTGCTGGCTTTTTACAGTAATTTCACCTTGATTTTTGCAGAGCATCTCATTCCTCAGGATGTCCTGCCATCGTTTGCCAAGAGCATCATGTATGGAGCGGGATTCATCTGCCCTCAGTTATTGGTTTTGTGCAGCCAGAATTTTCTCCATAAGTTTGGCTACTACAGACTCATCCTGATCAGCTTCTATGTGGAGGCCGGAGCTGCGGTCATCATGTTGCTGTTGGGTCCAGGCAGCTACTATTTCCTTGCATTGTTCCTCACTTCCAGCATGGTCCTGGTTCAGGCGGCCTTCAGTCTCTTCAATTTGCCTCTGGCTGACATCATCGACTCTGACCTGCAGAAATACAAACGCAGCTCTCCTCTTTCGTCTATGGTTTTCGGGACCAACGCTCTTTTCACAAAGCCGGCCCAGTCTCTGGCTCCTATGATGGCCGTGTCCATCCTGAACCAATATGGCTATGCGGAAATGCATGAGGTTGTGAAGGCTGCGGATCCAATTGCTCTTGAGTCCCTGCACAGCATGATGTTTTACCTGGTGTGTGTGGTGCCGCTGTGTGTCACAGTCCTGCAGGTGGTGGCGTGGAGGCCCTTCTCCATACGGGACAGCCACACACTGGACGCAAAGTACATTGATGGGTGAATTTAGCTCATGTTGTTCTGTTTGTGTGCTCTCATGTGCAACAGGTTATTTATATTTTGATTTTGATTGTCAAACTACAGGCTGTACTGTAGTGAGAAAGGGAATTTGTAGATGAATTAAGAGTCAGGGATCTTTTATTATGGGAAAGCCGGTCTGTTTCTTTAGAGGTGTTGGTTCTCCGGCTGTATTTATTGTTTGAAGTATATGCTCAGATTACATCACACAAATGCAAGAAAGTTTATGGCAAGAAATCAGATACATTTTCTGAAATGTAGCAAATTGGTACAGTCTGCCAGCCATTCTCAAAAAATAAA

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374796 lncRNA downstream 1157 2095180 ~ 2095409 (-) True G329718
TU374788 lncRNA downstream 25037 2071216 ~ 2071529 (-) True G329710
TU374779 lncRNA downstream 42548 2053580 ~ 2054018 (-) True G329702
TU374762 lncRNA downstream 61246 2034946 ~ 2035320 (-) True G329686
TU374763 lncRNA downstream 63438 2032807 ~ 2033128 (-) True G329687
TU374868 lncRNA upstream 9948 2118564 ~ 2118788 (-) True G329776
TU374861 lncRNA upstream 47475 2156091 ~ 2156904 (-) True G329769
TU374859 lncRNA upstream 72198 2180814 ~ 2181565 (-) True G329767
TU374834 lncRNA upstream 89894 2198510 ~ 2212627 (-) True CI01000112_02185619_02204929
TU374897 lncRNA upstream 174029 2282645 ~ 2282857 (-) True G329805
CI01000112_02087239_02090806.mRNA mRNA downstream 5760 2086709 ~ 2090806 (-) True CI01000112_02087239_02090806
CI01000112_02000588_02006313.mRNA mRNA downstream 89433 2000527 ~ 2007133 (-) True CI01000112_02000588_02006313
CI01000112_01999128_02000283.mRNA mRNA downstream 96283 1999119 ~ 2000283 (-) True CI01000112_01999128_02000283
CI01000112_01967374_01971965.mRNA mRNA downstream 124601 1967058 ~ 1971965 (-) False CI01000112_01967374_01971965
CI01000112_01953215_01962043.mRNA mRNA downstream 133815 1953158 ~ 1962751 (-) False CI01000112_01953215_01962043
CI01000112_02143799_02166631.mRNA mRNA upstream 35129 2143745 ~ 2166631 (-) True CI01000112_02143799_02166631
CI01000112_02185619_02204929.mRNA mRNA upstream 76477 2185093 ~ 2206282 (-) False CI01000112_02185619_02204929
CI01000112_02213671_02227376.mRNA mRNA upstream 104684 2213300 ~ 2227643 (-) True CI01000112_02213671_02227376
CI01000112_02242077_02249490.mRNA mRNA upstream 133126 2241742 ~ 2249490 (-) True CI01000112_02242077_02249490
CI01000112_02269456_02270414.mRNA mRNA upstream 160216 2268832 ~ 2270414 (-) True CI01000112_02269456_02270414
TU374741 other downstream 77113 2016704 ~ 2019453 (-) True G329672
TU374625 other downstream 98707 1991666 ~ 1997859 (-) True G329569
TU374607 other downstream 286827 1798016 ~ 1809739 (-) False G329559
TU374601 other downstream 286827 1809220 ~ 1809739 (-) True G329559
TU374605 other downstream 295908 1798016 ~ 1800658 (-) False G329559
TU375077 other upstream 958704 3067320 ~ 3072730 (-) False CI01000112_03068505_03072256
TU375076 other upstream 959210 3067826 ~ 3072730 (-) True CI01000112_03068505_03072256
TU375127 other upstream 1395839 3518826 ~ 3519083 (-) True G330017
TU375455 other upstream 1651183 3759799 ~ 3768605 (-) False G330301

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050706 True 1735 mRNA 0.50 6 NC_007114.7 58455428 ~ 58468835 (+)