RNA id: CI01000112_01953215_01962043.mRNA



Basic Information


Item Value
RNA id CI01000112_01953215_01962043.mRNA
length 1269
RNA type mRNA
GC content 0.37
exon number 4
gene id CI01000112_01953215_01962043
representative False

Chromosome Information


Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1953158 ~ 1962751 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAGAAGAAAATAACATAATACATAGGCCTATTAAGAAATATTTCTAAAAAGAAAAAAACGGGGTATTAACGTACTTGCATTACAGCACAGTCCTTGAAAATGTAAACACAATTTTGACATTTACTGTACTGTTTGAATTAATTCTAAACAGCAAATGCTTACACGATTGCTTACATTCACTACATGTGGTTATGTGAATGTGAATATGATTTTTTTTTTTTTTTTTTTTTAACTTATTGATAGTATTTTTTTAATCTCCACATGGCGCAGTTGACTGCTACTCGCAAAAAAGGGGTTGTGATATGTACACTCCATAACGTGAAAATCTATGTTTATTAGCACCACTTAGTGGTCAAGAGCAGAAGTAAATTTTCCGCCGCAAACCACGACGGTACCCGTGACGACAAAAAAACGCATTCTGGTTGAGTATCATCTCTATTCATAATCCATTACTAAAGGAGTCCAGACATTAGAAAAATGTCAGTCTATACAATCGTTTTATATTTTAGATGAGGGAAATATACATGCGTTACGGACGTGACAAACAAAATCTCTTAAGTTTTAGGTGACAGTATATTTTTTAGGAACTCTGTGAATAACACAGTGCAAACCAAAATAATACTACCAACTGAATGAAGAAGGGTTGGCATAAAATATTCATTTTATTTTATTTTTCGTGTTTATGAGGAAAAAAACACCGTTACGGACATGACCGCTCTAAAAGCAACACAGAAGACTGCTTTAAACATTTACAGAGACCTCAAGCGGGCATATAAACCAACAAATATTGAAATCTGGGATGCCAGTATGTGTTATATTTACGGTCCTGTAGAAGAGGTGCTGCAGGACCCTCCGCATCCCTTATCCTGTGTCCCTGCTGCTGTATCACAAATCCTAGGGACAAAATATTCTCTACAATCATCAAACTCCATGCTGAGAGAGCTGGATCTGACTAACAATGACCTGCAGGATTCAGGGGTAAAGCTACTCTGTGCTGGATTAAAGAGTCCAAACTGTCAACTCAACATACTGAGATTATCTTACTGTATGGTGTCAGAGGAAGGTTGTGCTGCTCTGGCATCAGCTCTGAGTTCAAACCCTTCACACCTGAAAGAGCTGGATCTGAGCTACAATCACCCAGGAGAATCAGGAAAGAAGCTGCTCTCTGATACACTCAAACATCTGGACAAACTCAAGTATGTTGAACATTAACAATCATCATGTCGCTGTGTGTTGTCAAGAGAAGTTTTTTTTGGTTCTCACAAAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU374648 lncRNA downstream 19456 1932935 ~ 1933702 (-) True G329589
TU374618 lncRNA downstream 66965 1883033 ~ 1886193 (-) True G329564
TU374710 lncRNA downstream 72629 1880119 ~ 1880529 (-) True G329647
TU374709 lncRNA downstream 73421 1878999 ~ 1879737 (-) True G329646
TU374611 lncRNA downstream 74216 1874026 ~ 1878942 (-) True G329560
TU374654 lncRNA upstream 11009 1973760 ~ 1974919 (-) True G329595
TU374638 lncRNA upstream 14950 1977701 ~ 1980810 (-) True G329579
TU374639 lncRNA upstream 18617 1981368 ~ 1984136 (-) True G329580
TU374734 lncRNA upstream 45258 2008009 ~ 2008229 (-) True G329666
TU374763 lncRNA upstream 70056 2032807 ~ 2033128 (-) True G329687
CI01000112_01772132_01776695.mRNA mRNA downstream 176305 1771747 ~ 1776853 (-) True CI01000112_01772132_01776695
CI01000112_01517833_01520418.mRNA mRNA downstream 432612 1517728 ~ 1520546 (-) True CI01000112_01517833_01520418
CI01000112_01486968_01488917.mRNA mRNA downstream 463657 1485371 ~ 1489501 (-) True CI01000112_01486968_01488917
CI01000112_01437714_01440420.mRNA mRNA downstream 512650 1437457 ~ 1440508 (-) True CI01000112_01437714_01440420
CI01000112_01367862_01375489.mRNA mRNA downstream 575784 1367451 ~ 1377374 (-) True CI01000112_01367862_01375489
CI01000112_01967374_01971965.mRNA mRNA upstream 4307 1967058 ~ 1971965 (-) False CI01000112_01967374_01971965
CI01000112_01999128_02000283.mRNA mRNA upstream 36368 1999119 ~ 2000283 (-) True CI01000112_01999128_02000283
CI01000112_02000588_02006313.mRNA mRNA upstream 37776 2000527 ~ 2007133 (-) True CI01000112_02000588_02006313
CI01000112_02087239_02090806.mRNA mRNA upstream 123958 2086709 ~ 2090806 (-) True CI01000112_02087239_02090806
CI01000112_02096880_02108616.mRNA mRNA upstream 133815 2096566 ~ 2108616 (-) True CI01000112_02096880_02108616
TU374607 other downstream 143419 1798016 ~ 1809739 (-) False G329559
TU374601 other downstream 143419 1809220 ~ 1809739 (-) True G329559
TU374605 other downstream 152500 1798016 ~ 1800658 (-) False G329559
TU374646 other downstream 319836 1629776 ~ 1633322 (-) True G329587
TU373529 other downstream 666200 1286655 ~ 1286958 (-) True G328642
TU374625 other upstream 28915 1991666 ~ 1997859 (-) True G329569
TU374741 other upstream 53953 2016704 ~ 2019453 (-) True G329672
TU375077 other upstream 1104569 3067320 ~ 3072730 (-) False CI01000112_03068505_03072256
TU375076 other upstream 1105075 3067826 ~ 3072730 (-) True CI01000112_03068505_03072256
TU375127 other upstream 1541704 3518826 ~ 3519083 (-) True G330017

Expression Profile