G329564


Basic Information

Item Value
gene id G329564
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1883033 ~ 1886193 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU374618
TCTCTGACCAGCTCTTTGGCACTGGAGTGACTGGTGGCCAGAACGCTCTTATAGTTGGTCCCTTGACAAATGTCACTGCCAAATATCTTAAGGATCCCTGGGACAGTTCTCTGACTGGACAGCTCTGCAGGGTCGTCCACTGCATGCAGTTCTAGGGTTCTGGCCTCCTGACCCTGCCGCCCGTTTCGCAGAACAGGACTTCGGTTAAACACCGTGGTCAGCCTGTTGTTGTGTCGGCGTATCTTGCTCTTGGCCGGCTGCCTGACTCCAGTGCTCTCCACAGACTGAGCCGTGCTGTCAGACGCGCTGGACTGTAGAGATCCGTTGCTGGCCTTTCTGCCCAGCATCGCCAGGCGTCTCTTGGGCGAGCGGATCAATAACCCAACGGGAAAGCCGAGAGCTTGTTTAGAGATGTGATTGCTTCTCTCCTCCGAGATCATTTTAACATGTGCAGAAATATCATGTATTATTGCGAATGCCAAAATTGTTTTTCAAAGCTATATCGCAGTCTGTCTGCTCCGCGTGCTGTCAAAATAACTCGCGTCAGTGCAACACATGTTGCGCGCACTGCTCGAATAACTTGTAACTTTAAGCGCTAAACATCATCACTCGTCCTGCCTCCTCATGCGAGTCCTTTGGTCGCTTTCATAAACATATTCCATTGCGAGGTTTAAGAAAGAAAAAAATCATTATCCACTTCGGCATTAAATAAATGTTGATGTATTATCCAGTCCGGTTTGAAGAAGTCCTCTTTAATTCGACATGTCCTTGCGATTAAAACGAATGATAATCCATTACAGTAAACGACAGCGTTTCTGTCCGTCCTAATGCCCGTGTTGAGTGTCTCCTGTCCCGTGTGTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU374618 True 862 lncRNA 0.49 2 1883033 1886193

Neighbor

gene id symbol gene type direction distance location
CI01000112_01772132_01776695 PRPSAP1 coding downstream 106180 1771747 ~ 1776853 (-)
CI01000112_01517833_01520418 NA coding downstream 362487 1517728 ~ 1520546 (-)
CI01000112_01486968_01488917 NA coding downstream 393532 1485371 ~ 1489501 (-)
CI01000112_01437714_01440420 NA coding downstream 442525 1437457 ~ 1440508 (-)
CI01000112_01367862_01375489 NA coding downstream 505659 1367451 ~ 1377374 (-)
CI01000112_01953215_01962043 NA coding upstream 66965 1953158 ~ 1962751 (-)
CI01000112_01967374_01971965 NA coding upstream 80865 1967058 ~ 1971965 (-)
CI01000112_01999128_02000283 NA coding upstream 112926 1999119 ~ 2000283 (-)
CI01000112_02000588_02006313 NA coding upstream 114334 2000527 ~ 2007133 (-)
CI01000112_02087239_02090806 NA coding upstream 200516 2086709 ~ 2090806 (-)
G329647 NA non-coding downstream 2504 1880119 ~ 1880529 (-)
G329646 NA non-coding downstream 3296 1878999 ~ 1879737 (-)
G329560 NA non-coding downstream 4091 1870606 ~ 1878942 (-)
G329558 NA non-coding downstream 57891 1757708 ~ 1825142 (-)
G329589 NA non-coding upstream 46742 1932935 ~ 1933702 (-)
G329595 NA non-coding upstream 87567 1973760 ~ 1974919 (-)
G329579 NA non-coding upstream 91508 1977701 ~ 1980810 (-)
G329580 NA non-coding upstream 95175 1981368 ~ 1984136 (-)
G329559 NA other downstream 73294 1791084 ~ 1809739 (-)
G329587 NA other downstream 249711 1629776 ~ 1633322 (-)
G328642 NA other downstream 596075 1286655 ~ 1286958 (-)
G328641 NA other downstream 596509 1286092 ~ 1286524 (-)
CI01000112_00810157_00821637 TRIM25 other downstream 1014397 808545 ~ 821932 (-)
G329569 NA other upstream 105473 1991666 ~ 1997859 (-)
G329672 NA other upstream 130511 2016704 ~ 2019453 (-)
CI01000112_03068505_03072256 NA other upstream 1181127 3067320 ~ 3072879 (-)
CI01000112_03506254_03517454 NA other upstream 1618262 3504455 ~ 3518742 (-)
G330301 NA other upstream 1873606 3758244 ~ 3773774 (-)

Expression


Co-expression Network