RNA id: TU374709


Basic Information

Item Value
RNA id TU374709
length 739
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G329646
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1878999 ~ 1879737 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAAATTCTGGACTGGAGAAAAAAAAGGTACTGTATAATTTATAAAAAATAAATAAAAAAATAAAACCTCAAATAAGGGAGGTCAAAGTGTATCCTTTCAAAATGGTCAGGTGTTTATATTTGCGGTGTTGTTTATCAAACACCAATAAAGATGCCTAATGGTTAGAGTGTCAAACTTGTAACCCAAAGGTTGTGGGTTTGACTCTCAGTACCTGCAGGCAATGTAAGTGAGGGAGTGAGTGTGAACAGTGCTCTCGTCCACTCTCATTACCCACAACTGAAGTGCCCTACCCCCCGCCGCAGCAAAAAAAGGCTGCCCAATGCTCTGGGAGTGTACTTGGATGTGTGAAATGCAGAGAACAAATTCTGAGTATGGGGCACCATATTTGGCTACACGTCACATTCACTTTCAAACACAAAAGCGGTTTCTCTTCCTTTGCTATATGTGAATTTTGACAATCACATGAGCAGCCTATTTCACTCAACAAGGGTCTGTTTCAATGTGACGAGTCTGCATGTGTGTATTTAAACTTCATCTTCAGTTTTGGTGATTTCGATCATTCCTCTTCAGGCGGCCATTGGGTGAACCGACTTGCCTGTTTAGGTAAGCCTGAATTCACATACATTGAGATGCATTCAGAGTACTGAAAAACATGAAGAATGTATCTGCTGTTGACGTTCTGTAGGTTTCTGCAGTATAAATGCAATTCTGGACTTACTACATCAGATACATGCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374611 lncRNA downstream 57 1874026 ~ 1878942 (-) True G329560
TU374610 lncRNA downstream 4625 1870606 ~ 1874374 (-) False G329560
TU374597 lncRNA downstream 53857 1757708 ~ 1825142 (-) True G329558
TU374698 lncRNA downstream 62363 1816261 ~ 1816636 (-) True G329638
TU374600 lncRNA downstream 69260 1791084 ~ 1809739 (-) False G329559
TU374710 lncRNA upstream 382 1880119 ~ 1880529 (-) True G329647
TU374618 lncRNA upstream 3296 1883033 ~ 1886193 (-) True G329564
TU374648 lncRNA upstream 53198 1932935 ~ 1933702 (-) True G329589
TU374615 lncRNA upstream 79824 1970031 ~ 1970361 (-) True CI01000112_01967374_01971965
TU374654 lncRNA upstream 94023 1973760 ~ 1974919 (-) True G329595
CI01000112_01772132_01776695.mRNA mRNA downstream 102146 1771747 ~ 1776853 (-) True CI01000112_01772132_01776695
CI01000112_01517833_01520418.mRNA mRNA downstream 358453 1517728 ~ 1520546 (-) True CI01000112_01517833_01520418
CI01000112_01486968_01488917.mRNA mRNA downstream 389498 1485371 ~ 1489501 (-) True CI01000112_01486968_01488917
CI01000112_01437714_01440420.mRNA mRNA downstream 438491 1437457 ~ 1440508 (-) True CI01000112_01437714_01440420
CI01000112_01367862_01375489.mRNA mRNA downstream 501625 1367451 ~ 1377374 (-) True CI01000112_01367862_01375489
CI01000112_01953215_01962043.mRNA mRNA upstream 73421 1953158 ~ 1962751 (-) False CI01000112_01953215_01962043
CI01000112_01967374_01971965.mRNA mRNA upstream 87321 1967058 ~ 1971965 (-) False CI01000112_01967374_01971965
CI01000112_01999128_02000283.mRNA mRNA upstream 119382 1999119 ~ 2000283 (-) True CI01000112_01999128_02000283
CI01000112_02000588_02006313.mRNA mRNA upstream 120790 2000527 ~ 2007133 (-) True CI01000112_02000588_02006313
CI01000112_02087239_02090806.mRNA mRNA upstream 206972 2086709 ~ 2090806 (-) True CI01000112_02087239_02090806
TU374607 other downstream 69260 1798016 ~ 1809739 (-) False G329559
TU374601 other downstream 69260 1809220 ~ 1809739 (-) True G329559
TU374605 other downstream 78341 1798016 ~ 1800658 (-) False G329559
TU374646 other downstream 245677 1629776 ~ 1633322 (-) True G329587
TU373529 other downstream 592041 1286655 ~ 1286958 (-) True G328642
TU374625 other upstream 111929 1991666 ~ 1997859 (-) True G329569
TU374741 other upstream 136967 2016704 ~ 2019453 (-) True G329672
TU375077 other upstream 1187583 3067320 ~ 3072730 (-) False CI01000112_03068505_03072256
TU375076 other upstream 1188089 3067826 ~ 3072730 (-) True CI01000112_03068505_03072256
TU375127 other upstream 1624718 3518826 ~ 3519083 (-) True G330017

Expression Profile