RNA id: TU374615


Basic Information

Item Value
RNA id TU374615
length 331
lncRNA type read_through
GC content 0.38
exon number 1
gene id CI01000112_01967374_01971965
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1967058 ~ 1971965 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCACACAGTAAACAACCCAGAGAGCATCAACAAAATAATCCAAAACCTCAAACGAGGTCAAAAAAACAATGTCAGTCCTGAAAGATGGATGAATCTGTCACACTGCTTGATTGAGATGAAGAATAATTCTGTTGTTGAAGAAATGCAGGCATTTTTAAAATCTGAAACAATAAGTCAAAGTCTTTCTCTTGCACAATGTTCAACTTTGGCAAACATGATCCTGATGTCAGAGGAGGTGATGGATGAGTTTGACCTTAAAAAGTACAAATTCAAATCAAAAGAGGGAGGATTAAGACTGTTACCTGCTGTGAGGAACTGCAGAAAAGCTCTATTGGCAAGCTGTAATCTCACTGATCAACACTGTGAAATTGTGGCTTCAGCTCTACAATCATCAAACTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374648 lncRNA downstream 25859 1932935 ~ 1933702 (-) True G329589
TU374618 lncRNA downstream 73368 1883033 ~ 1886193 (-) True G329564
TU374710 lncRNA downstream 79032 1880119 ~ 1880529 (-) True G329647
TU374709 lncRNA downstream 79824 1878999 ~ 1879737 (-) True G329646
TU374611 lncRNA downstream 80619 1874026 ~ 1878942 (-) True G329560
TU374654 lncRNA upstream 3399 1973760 ~ 1974919 (-) True G329595
TU374638 lncRNA upstream 7340 1977701 ~ 1980810 (-) True G329579
TU374639 lncRNA upstream 11007 1981368 ~ 1984136 (-) True G329580
TU374734 lncRNA upstream 37648 2008009 ~ 2008229 (-) True G329666
TU374763 lncRNA upstream 62446 2032807 ~ 2033128 (-) True G329687
CI01000112_01772132_01776695.mRNA mRNA downstream 182708 1771747 ~ 1776853 (-) True CI01000112_01772132_01776695
CI01000112_01517833_01520418.mRNA mRNA downstream 439015 1517728 ~ 1520546 (-) True CI01000112_01517833_01520418
CI01000112_01486968_01488917.mRNA mRNA downstream 470060 1485371 ~ 1489501 (-) True CI01000112_01486968_01488917
CI01000112_01437714_01440420.mRNA mRNA downstream 519053 1437457 ~ 1440508 (-) True CI01000112_01437714_01440420
CI01000112_01367862_01375489.mRNA mRNA downstream 582187 1367451 ~ 1377374 (-) True CI01000112_01367862_01375489
CI01000112_01999128_02000283.mRNA mRNA upstream 28758 1999119 ~ 2000283 (-) True CI01000112_01999128_02000283
CI01000112_02000588_02006313.mRNA mRNA upstream 30166 2000527 ~ 2007133 (-) True CI01000112_02000588_02006313
CI01000112_02087239_02090806.mRNA mRNA upstream 116348 2086709 ~ 2090806 (-) True CI01000112_02087239_02090806
CI01000112_02096880_02108616.mRNA mRNA upstream 126205 2096566 ~ 2108616 (-) True CI01000112_02096880_02108616
CI01000112_02143799_02166631.mRNA mRNA upstream 173384 2143745 ~ 2166631 (-) True CI01000112_02143799_02166631
TU374607 other downstream 149822 1798016 ~ 1809739 (-) False G329559
TU374601 other downstream 149822 1809220 ~ 1809739 (-) True G329559
TU374605 other downstream 158903 1798016 ~ 1800658 (-) False G329559
TU374646 other downstream 326239 1629776 ~ 1633322 (-) True G329587
TU373529 other downstream 672603 1286655 ~ 1286958 (-) True G328642
TU374625 other upstream 21305 1991666 ~ 1997859 (-) True G329569
TU374741 other upstream 46343 2016704 ~ 2019453 (-) True G329672
TU375077 other upstream 1096959 3067320 ~ 3072730 (-) False CI01000112_03068505_03072256
TU375076 other upstream 1097465 3067826 ~ 3072730 (-) True CI01000112_03068505_03072256
TU375127 other upstream 1534094 3518826 ~ 3519083 (-) True G330017

Expression Profile